Personal tools

UBERON:0004291: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004291
|alt_id=
|name=heart rudiment
|namespace=
|def="a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
|xref=TAO:0000115;;ZFA:0000115
|is_a=UBERON:0000483;;UBERON:0004120
|synonym="heart cone" EXACT [GO:0003313];;"rudimentary heart" EXACT [ZFA:0000115]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003084;;UBERON:0004139
|develops_from=UBERON:0003084;;UBERON:0004139
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004291
|is_a=UBERON:0012275
|is_obsolete=
|located_in=
|located_in=
|name=heart rudiment
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string
|is_obsolete=
|subset=
|preceded_by=
|synonym="heart cone" EXACT [GO:0003313];;"rudimentary heart" EXACT [ZFA:0000115]
|union_of=
|xref=TAO:0000115;;ZFA:0000115
}}
}}

Revision as of 11:29, 12 September 2014

Name:heart rudiment
Definition:"a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
Xrefs:
links:

TAO:0000115

ZFA:0000115
Synonyms: "heart cone" EXACT [GO:0003313]
"rudimentary heart" EXACT [ZFA:0000115]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0012275(meso-epithelium)
develops_from:UBERON:0003084(heart primordium),UBERON:0004139(cardiogenic plate)



Children

develops from:UBERON:0005498 (primitive heart tube)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004291 (heart rudiment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr9:24549775..24549776, -
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr4:147375434..147375447, +
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_c2098f72f6ae8a74426a0db946c00732p@chr4:140980456..140980463, +
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_c2098f72f6ae8a74426a0db946c00732p@chr4:140980456..140980463, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr12:113728951..113728965, +
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr1:137737483..137737497, -
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr1:137737483..137737497, -
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr12:113728951..113728965, +
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr4:147375200..147375220, +
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr19:36187511..36187515, -
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr19:36187511..36187515, -
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr4:147375200..147375220, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568790..55568803, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_3b0441732889304b94e083d8f566b6dap@chr14:55579265..55579297, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747953..137747967, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_3b0441732889304b94e083d8f566b6dap@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_3b0441732889304b94e083d8f566b6dap@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_3b0441732889304b94e083d8f566b6dap@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_3b0441732889304b94e083d8f566b6dap@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_3b0441732889304b94e083d8f566b6dap@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_3b0441732889304b94e083d8f566b6dap@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_3b0441732889304b94e083d8f566b6dap@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_3b0441732889304b94e083d8f566b6dap@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_3b0441732889304b94e083d8f566b6dap@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_3b0441732889304b94e083d8f566b6dap@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747382..137747385, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_3b0441732889304b94e083d8f566b6dap@chr5:120286706..120286736, +
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_3b0441732889304b94e083d8f566b6dap@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744636..137744654, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_3b0441732889304b94e083d8f566b6dap@chr19:36193772..36193793, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_3b0441732889304b94e083d8f566b6dap@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_3b0441732889304b94e083d8f566b6dap@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_3b0441732889304b94e083d8f566b6dap@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744611..137744621, +
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_3b0441732889304b94e083d8f566b6dap2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_3b0441732889304b94e083d8f566b6dap@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_3b0441732889304b94e083d8f566b6dap@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_3b0441732889304b94e083d8f566b6dap@chr14:55563577..55563611, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744333..137744352, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_3b0441732889304b94e083d8f566b6dap@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_3b0441732889304b94e083d8f566b6dap@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_3b0441732889304b94e083d8f566b6dap@chr1:137747289..137747313, +
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_3b0441732889304b94e083d8f566b6dap@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568737..55568746, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_3b0441732889304b94e083d8f566b6dap@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_3b0441732889304b94e083d8f566b6dap@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_3b0441732889304b94e083d8f566b6dap@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_3b0441732889304b94e083d8f566b6dap@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_3b0441732889304b94e083d8f566b6dap@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_3b0441732889304b94e083d8f566b6dap@chr14:55586837..55586880, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568937..55568988, -
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_3b0441732889304b94e083d8f566b6dap2@Mov10l1
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_7f7f62b007b4b9e45767a23727b73aa2p@chr1:137742152..137742184, -
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_7f7f62b007b4b9e45767a23727b73aa2p@chr1:137742152..137742184, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_43b10297217e2678fda1b7363dc3b4abp@chr1:137742470..137742481, +
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_43b10297217e2678fda1b7363dc3b4abp@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_43b10297217e2678fda1b7363dc3b4abp2@Tnni3
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_43b10297217e2678fda1b7363dc3b4abp@chr1:137742470..137742481, +
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_43b10297217e2678fda1b7363dc3b4abp@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_43b10297217e2678fda1b7363dc3b4abp@chr16:5431481..5431510, +
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_43b10297217e2678fda1b7363dc3b4abp2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_43b10297217e2678fda1b7363dc3b4abp@chr14:55577329..55577367, -
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_7d7dea209a25d9f787051e4641653620p1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_7d7dea209a25d9f787051e4641653620p1@ENSMUST00000154140
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_7d7dea209a25d9f787051e4641653620p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_7d7dea209a25d9f787051e4641653620p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_7d7dea209a25d9f787051e4641653620p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_7d7dea209a25d9f787051e4641653620p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_7d7dea209a25d9f787051e4641653620p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_7d7dea209a25d9f787051e4641653620p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_7d7dea209a25d9f787051e4641653620p5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_7d7dea209a25d9f787051e4641653620p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_7d7dea209a25d9f787051e4641653620p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_7d7dea209a25d9f787051e4641653620p5@Nebl
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_b385bf3167647796cfe17194e7be0125p@chr9:24529233..24529237, -
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_b385bf3167647796cfe17194e7be0125p@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_716814bb1b480ace13b70504d4671739p6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_716814bb1b480ace13b70504d4671739p6@Usp20










Property "Property value" (as page type) with input value "UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004291&oldid=3274328"