Personal tools

UBERON:0006915: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0006915
|alt_id=
|name=stratified squamous epithelium
|namespace=
|def="Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]" [FMA:45563]
|xref=FMA:45563;;ncithesaurus:Stratified_Squamous_Epithelium
|is_a=UBERON:0000486;;UBERON:0006914
|synonym="epithelium stratificatum squamosum" EXACT [FMA:45563]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]" [FMA:45563]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006915
|is_a=UBERON:0000486 ;;UBERON:0006914
|is_obsolete=
|located_in=
|located_in=
|name=stratified squamous epithelium
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelium stratificatum squamosum" EXACT [FMA:45563]
|union_of=
|xref=FMA:45563;;ncithesaurus:Stratified_Squamous_Epithelium
}}
}}

Revision as of 11:41, 12 September 2014

Name:stratified squamous epithelium
Definition:"Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]" [FMA:45563]
Xrefs:
links:

FMA:45563

ncithesaurus:Stratified_Squamous_Epithelium
Synonyms: "epithelium stratificatum squamosum" EXACT [FMA:45563]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000486(multilaminar epithelium),UBERON:0006914(squamous epithelium)



Children

is a:UBERON:0001949 (gingival epithelium),UBERON:0002018 (synovial membrane of synovial joint)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006915 (stratified squamous epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.24e-88FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_9d3dda18fd2a95976fc08440df98cd4fp31@SEMA3C
6.24e-88FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_9d3dda18fd2a95976fc08440df98cd4fp31@SEMA3C
1.71e-66FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_e6efa9632d678298529a6cddbb59185bp@chr18:22150956..22150983, +
1.71e-66FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_e6efa9632d678298529a6cddbb59185bp@chr18:22150956..22150983, +
2.39e-66FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_38e49902865eb3c5a2b81a2eda9e4e4dp1@ENST00000517363
2.39e-66FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_38e49902865eb3c5a2b81a2eda9e4e4dp1@ENST00000517363
2.39e-66FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr1:172134667..172134711, +
2.39e-66FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr1:172134736..172134739, +
2.39e-66FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr2:181751144..181751146, +
2.39e-66FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr12:130786785..130786827, -
2.39e-66FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr1:172134736..172134739, +
2.39e-66FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_38e49902865eb3c5a2b81a2eda9e4e4dp9@SKOR1
2.39e-66FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr1:172134755..172134764, +
2.39e-66FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_38e49902865eb3c5a2b81a2eda9e4e4dp9@SKOR1
2.39e-66FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_38e49902865eb3c5a2b81a2eda9e4e4dp@chr1:172134755..172134764, +
1.68e-53FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_c6a48631bf856367d495b5be3c9bb818p5@CDCA2
1.68e-53FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_c6a48631bf856367d495b5be3c9bb818p5@CDCA2
2.19e-53FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_a2387d8da6551ea99a0bf2737c55be3fp@chr2:242009429..242009432, +
2.19e-53FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_a2387d8da6551ea99a0bf2737c55be3fp@chr2:242009429..242009432, +
2.87e-53FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_ce4aeceb25a8a3e210c9487a5114877cp@chr12:131476821..131476831, -
2.87e-53FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_ce4aeceb25a8a3e210c9487a5114877cp@chr12:131476821..131476831, -
1.22e-44FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_4f5359ca06e77609d1523870eaaa8059p@chrY:58884631..58884640, +
1.22e-44FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_4f5359ca06e77609d1523870eaaa8059p@chrY:58884631..58884640, +
1.8e-38FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_d9a21033730d8c4a74753e546f3aa0d3p@chr1:142537706..142537723, -
1.8e-38FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_d9a21033730d8c4a74753e546f3aa0d3p@chr1:142537706..142537723, -
1.85e-36FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_365c49c8c0d783d184e85edb71ae22c1p@chr10:131634104..131634108, -
1.85e-36FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_365c49c8c0d783d184e85edb71ae22c1p@chr10:131634104..131634108, -
3.33e-34FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_a0c6748aa87dc758dfc22dfdc0663e0cp@chr17:9066265..9066271, +
3.33e-34FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_a0c6748aa87dc758dfc22dfdc0663e0cp@chr17:9066265..9066271, +
4.27e-34FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_8250fd4948b95a9a3f7e1780611c52a6p@chr15:68124311..68124318, +
4.27e-34FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_8250fd4948b95a9a3f7e1780611c52a6p@chr8:78774585..78774589, -
4.27e-34FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_8250fd4948b95a9a3f7e1780611c52a6p5@FZD10
4.27e-34FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_8250fd4948b95a9a3f7e1780611c52a6p1@LOC641364
4.27e-34FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_8250fd4948b95a9a3f7e1780611c52a6p1@ENST00000519738
4.27e-34FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_8250fd4948b95a9a3f7e1780611c52a6p1@LOC641364
4.27e-34FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_8250fd4948b95a9a3f7e1780611c52a6p1@ENST00000519738
4.27e-34FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_8250fd4948b95a9a3f7e1780611c52a6p@chr15:68118244..68118272, +
4.27e-34FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_8250fd4948b95a9a3f7e1780611c52a6p@chr15:68118244..68118272, +
4.27e-34FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_8250fd4948b95a9a3f7e1780611c52a6p@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_8250fd4948b95a9a3f7e1780611c52a6p15@HOXC10
4.27e-34FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_8250fd4948b95a9a3f7e1780611c52a6p@chr12:91435143..91435151, -
4.27e-34FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_8250fd4948b95a9a3f7e1780611c52a6p@chr10:135140510..135140524, -
4.27e-34FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_8250fd4948b95a9a3f7e1780611c52a6p@chr5:1043105..1043109, +
4.27e-34FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_8250fd4948b95a9a3f7e1780611c52a6p15@HOXC10
4.27e-34FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_8250fd4948b95a9a3f7e1780611c52a6p@chr15:68124311..68124318, +
4.27e-34FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_8250fd4948b95a9a3f7e1780611c52a6p5@FZD10
4.27e-34FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_8250fd4948b95a9a3f7e1780611c52a6p@chr10:135140510..135140524, -
4.27e-34FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_8250fd4948b95a9a3f7e1780611c52a6p@chr8:78774585..78774589, -
4.27e-34FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_8250fd4948b95a9a3f7e1780611c52a6p@chr5:1043105..1043109, +
5.51e-34FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_dbdb30367bc89daf41b147121af42639p6@ACAN
5.51e-34FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_dbdb30367bc89daf41b147121af42639p6@ACAN
5.96e-34FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_4bd3043c005865dad6e593d96eb6c73cp12@HOXC11
5.96e-34FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_4bd3043c005865dad6e593d96eb6c73cp3@SKOR1
5.96e-34FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_4bd3043c005865dad6e593d96eb6c73cp3@SKOR1
5.96e-34FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_4bd3043c005865dad6e593d96eb6c73cp@chr17:63705566..63705573, -
5.96e-34FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_4bd3043c005865dad6e593d96eb6c73cp@chr17:63705566..63705573, -
5.96e-34FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_4bd3043c005865dad6e593d96eb6c73cp@chr1:172145683..172145699, +
5.96e-34FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_4bd3043c005865dad6e593d96eb6c73cp@chr1:172145683..172145699, +
5.96e-34FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_4bd3043c005865dad6e593d96eb6c73cp@chr13:73102090..73102097, -
5.96e-34FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_4bd3043c005865dad6e593d96eb6c73cp@chr13:73102090..73102097, -
5.96e-34FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_4bd3043c005865dad6e593d96eb6c73cp11@C6orf132
5.96e-34FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_4bd3043c005865dad6e593d96eb6c73cp11@C6orf132
5.96e-34FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_4bd3043c005865dad6e593d96eb6c73cp12@HOXC11
7.7e-34FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_545ac469961733244ab3bee648b0166dp@chrY:13450855..13450866, +
7.7e-34FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_545ac469961733244ab3bee648b0166dp@chrY:13450855..13450866, +
1.46e-31FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_ef31ed4396e916a452a46a5d7654233ep@chr19:18718172..18718197, +
1.46e-31FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_ef31ed4396e916a452a46a5d7654233ep@chr19:18718172..18718197, +
1.71e-30FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_d84e0283340b6bbf5307a43b7311e0fcp9@ERG
1.71e-30FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_d84e0283340b6bbf5307a43b7311e0fcp9@ERG
2.3e-30FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_fb81e1905e89d54c78049bc8e9a59604p8@ACAN
2.3e-30FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_fb81e1905e89d54c78049bc8e9a59604p@chr1:186273262..186273282, +
2.3e-30FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_fb81e1905e89d54c78049bc8e9a59604p8@ACAN
2.3e-30FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_fb81e1905e89d54c78049bc8e9a59604p@chr1:186273262..186273282, +
7.54e-30FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_f0a2fc269055bd4e5188cb8214f584a2p@chr1:186276427..186276448, +
7.54e-30FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_f0a2fc269055bd4e5188cb8214f584a2p@chr1:186276427..186276448, +
8.12e-28FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_c19449e2193b9b9497d972505b6e92f2p21@SEMA3C
8.12e-28FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_c19449e2193b9b9497d972505b6e92f2p21@SEMA3C
1.39e-27FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_c371f86b598dd6014ee6eed1aba3e7ccp@chr20:48160907..48160918, -
1.39e-27FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_c371f86b598dd6014ee6eed1aba3e7ccp@chr20:48160907..48160918, -
1.82e-27FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_ab25dfa9c3663550762d430e50ad0340p7@WISP2
1.82e-27FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_ab25dfa9c3663550762d430e50ad0340p7@WISP2
1.82e-27FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_ab25dfa9c3663550762d430e50ad0340p35@CCNL1
1.82e-27FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_ab25dfa9c3663550762d430e50ad0340p35@CCNL1
1.82e-27FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_ab25dfa9c3663550762d430e50ad0340p@chr1:142537912..142537938, -
1.82e-27FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_ab25dfa9c3663550762d430e50ad0340p@chr1:142537912..142537938, -
2.08e-27FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_f0ae658a40eebf33358330b778676fd3p@chr1:142539672..142539687, -
2.08e-27FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_f0ae658a40eebf33358330b778676fd3p@chr1:142539672..142539687, -
2.08e-27FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_f0ae658a40eebf33358330b778676fd3p@chr6:1609602..1609636, -
2.08e-27FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_f0ae658a40eebf33358330b778676fd3p@chr6:1609602..1609636, -
2.38e-27FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_4f17daa263e4dacbc3c0e933dd3140cfp2@ENST00000436845
2.38e-27FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_4f17daa263e4dacbc3c0e933dd3140cfp2@ENST00000436845
3.11e-27FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_9b76c053d9d93cdc2c9436d60e849f97p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_9b76c053d9d93cdc2c9436d60e849f97p15@CFB
3.11e-27FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_9b76c053d9d93cdc2c9436d60e849f97p@chr16:15680784..15680797, +
3.11e-27FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_9b76c053d9d93cdc2c9436d60e849f97p15@CFB
4.07e-27FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_fa2dddc807d6e7f3fbf0f3051b1651f6p21@SULF1
4.07e-27FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_fa2dddc807d6e7f3fbf0f3051b1651f6p21@SULF1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006915&oldid=3274549"