Personal tools

UBERON:0007914: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0007914
|alt_id=
|name=head or neck bone
|namespace=
|def=
|xref=MA:0000569
|is_a=UBERON:0001474
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007914
|is_a=UBERON:0001474
|is_obsolete=
|located_in=
|located_in=
|name=head or neck bone
|namespace=
|obo_creation_date=
|part_of=UBERON:0007811
|part_of=UBERON:0007811
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=MA:0000569
}}
}}

Revision as of 11:45, 12 September 2014

Name:head or neck bone
Xrefs:
links:
MA:0000569

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element)
part_of:UBERON:0007811(craniocervical region)



Children

is a:UBERON:0003457 (head bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007914 (head or neck bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_570e3aab45d7e47547f628ed89e9d81bp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_570e3aab45d7e47547f628ed89e9d81bp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_9012a5a077064ebfd5b6e162ce136ea6p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_9012a5a077064ebfd5b6e162ce136ea6p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_9012a5a077064ebfd5b6e162ce136ea6p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_9012a5a077064ebfd5b6e162ce136ea6p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_9012a5a077064ebfd5b6e162ce136ea6p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_9012a5a077064ebfd5b6e162ce136ea6p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_9012a5a077064ebfd5b6e162ce136ea6p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_9012a5a077064ebfd5b6e162ce136ea6p13@C17orf67
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c7b014f591b3f452f653d0547dd682dfp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_c7b014f591b3f452f653d0547dd682dfp4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c7b014f591b3f452f653d0547dd682dfp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_c7b014f591b3f452f653d0547dd682dfp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c7b014f591b3f452f653d0547dd682dfp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_c7b014f591b3f452f653d0547dd682dfp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c7b014f591b3f452f653d0547dd682dfp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_c7b014f591b3f452f653d0547dd682dfp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_c7b014f591b3f452f653d0547dd682dfp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c7b014f591b3f452f653d0547dd682dfp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_c7b014f591b3f452f653d0547dd682dfp1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c7b014f591b3f452f653d0547dd682dfp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c7b014f591b3f452f653d0547dd682dfp5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_c7b014f591b3f452f653d0547dd682dfp10@Otof
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c7b014f591b3f452f653d0547dd682dfp1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c7b014f591b3f452f653d0547dd682dfp4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_c7b014f591b3f452f653d0547dd682dfp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c7b014f591b3f452f653d0547dd682dfp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c7b014f591b3f452f653d0547dd682dfp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c7b014f591b3f452f653d0547dd682dfp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c7b014f591b3f452f653d0547dd682dfp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c7b014f591b3f452f653d0547dd682dfp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c7b014f591b3f452f653d0547dd682dfp2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c7b014f591b3f452f653d0547dd682dfp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c7b014f591b3f452f653d0547dd682dfp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c7b014f591b3f452f653d0547dd682dfp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c7b014f591b3f452f653d0547dd682dfp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_c7b014f591b3f452f653d0547dd682dfp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_c7b014f591b3f452f653d0547dd682dfp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c7b014f591b3f452f653d0547dd682dfp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c7b014f591b3f452f653d0547dd682dfp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c7b014f591b3f452f653d0547dd682dfp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_c7b014f591b3f452f653d0547dd682dfp3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_c7b014f591b3f452f653d0547dd682dfp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c7b014f591b3f452f653d0547dd682dfp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c7b014f591b3f452f653d0547dd682dfp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_c7b014f591b3f452f653d0547dd682dfp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_c7b014f591b3f452f653d0547dd682dfp4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c7b014f591b3f452f653d0547dd682dfp2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_c7b014f591b3f452f653d0547dd682dfp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_c7b014f591b3f452f653d0547dd682dfp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c7b014f591b3f452f653d0547dd682dfp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_c7b014f591b3f452f653d0547dd682dfp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_c7b014f591b3f452f653d0547dd682dfp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_c7b014f591b3f452f653d0547dd682dfp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_c7b014f591b3f452f653d0547dd682dfp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_c7b014f591b3f452f653d0547dd682dfp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_c7b014f591b3f452f653d0547dd682dfp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_c7b014f591b3f452f653d0547dd682dfp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c7b014f591b3f452f653d0547dd682dfp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_c7b014f591b3f452f653d0547dd682dfp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c7b014f591b3f452f653d0547dd682dfp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_c7b014f591b3f452f653d0547dd682dfp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_c7b014f591b3f452f653d0547dd682dfp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c7b014f591b3f452f653d0547dd682dfp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c7b014f591b3f452f653d0547dd682dfp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c7b014f591b3f452f653d0547dd682dfp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c7b014f591b3f452f653d0547dd682dfp4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_c7b014f591b3f452f653d0547dd682dfp1@Tomt

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0007914&oldid=3274603"