CL:0000082: Difference between revisions
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|located_in= | |located_in= | ||
|name=epithelial cell of lung | |name=epithelial cell of lung | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002048;;UBERON:0000115;;UBERON:0002048 | |part_of=UBERON:0002048;;UBERON:0000115;;UBERON:0002048 |
Latest revision as of 16:29, 12 September 2014
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000066(epithelial cell) |
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part_of: | UBERON:0002048(lung),UBERON:0000115(lung epithelium),UBERON:0002048(lung) |
Children
is a: | CL:0010003 (epithelial cell of alveolus of lung) |
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derives from: | FF:0100762 (lung cancer cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10502-107C7
... further results Mouse (Mus musculus)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10502-107C7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000082 (epithelial cell of lung), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data