CL:0000222: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=mesodermal cell | |name=mesodermal cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000926 | |part_of=UBERON:0000926 | ||
Latest revision as of 16:32, 12 September 2014
| Name: | mesodermal cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell of the middle germ layer of the embryo." [MESH:A.16.254.425.660] | ||
| Xrefs: |
| ||
| Synonyms: |
"mesoblast" EXACT [] "mesoderm cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002321(embryonic cell) |
|---|---|
| part_of: | UBERON:0000926(mesoderm) |
Children
| is a: | CL:0002546 (embryonic blood vessel endothelial progenitor cell),FF:10696-109G3 (mesodermal tumor cell line:HIRS-BM) |
|---|---|
| develops from: | CL:0000077 (mesothelial cell),CL:0000680 (muscle precursor cell),CL:0002078 (meso-epithelial cell),CL:0007010 (preosteoblast) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10696-109G3 (mesodermal tumor cell line:HIRS-BM)
Mouse (Mus musculus)
- 10696-109G3 (mesodermal tumor cell line:HIRS-BM)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000222 (mesodermal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.4e-74 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_6b70e68c7f53c98c083b997637e0d0ce | p@chrX:160838683..160838694, + |
| 2.4e-74 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_6b70e68c7f53c98c083b997637e0d0ce | p@chrX:160838683..160838694, + |
| 4.4e-68 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_8210c5219a3ab74981e852ce6269ab9d | p4@Gpr39 |
| 4.4e-68 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_8210c5219a3ab74981e852ce6269ab9d | p4@Gpr39 |
| 3.86e-64 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3a7b8c1335e3d4add4ac92fbdc5af87c | p@chrX:65748600..65748616, + |
| 3.86e-64 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3a7b8c1335e3d4add4ac92fbdc5af87c | p@chr12:105433069..105433075, - |
| 3.86e-64 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3a7b8c1335e3d4add4ac92fbdc5af87c | p@chr12:105433069..105433075, - |
| 3.86e-64 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3a7b8c1335e3d4add4ac92fbdc5af87c | p@chrX:65748600..65748616, + |
| 3.78e-62 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_615878bcda576b3ed46480927f2fa356 | p@chrX:160838787..160838800, + |
| 3.78e-62 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_615878bcda576b3ed46480927f2fa356 | p@chrX:160838787..160838800, + |
| 2.9e-57 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_8197dc334f0ce1348e0666a8f611c2c0 | p2@SOX17 |
| 2.9e-57 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_8197dc334f0ce1348e0666a8f611c2c0 | p2@SOX17 |
| 3.39e-56 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_9dc2c890d2873585cf7bb3142edcee08 | p@chr11:81849982..81850000, + |
| 3.39e-56 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_9dc2c890d2873585cf7bb3142edcee08 | p@chr11:81849982..81850000, + |
| 2.95e-54 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_2da3bb185870eba26b8f8e31d6012040 | p@chr12:96830430..96830450, + |
| 2.95e-54 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_2da3bb185870eba26b8f8e31d6012040 | p@chr12:96830430..96830450, + |
| 4.62e-52 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_8d92a14aa1f86cf0ec89a016a088faeb | p@chr17:14813242..14813246, - |
| 4.62e-52 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_8d92a14aa1f86cf0ec89a016a088faeb | p@chr17:14813242..14813246, - |
| 5.28e-50 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_bb5b5fc242076358f7b6f5dc6266df86 | p@chrX:160840025..160840037, + |
| 5.28e-50 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_bb5b5fc242076358f7b6f5dc6266df86 | p@chrX:160840048..160840057, + |
| 5.28e-50 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_bb5b5fc242076358f7b6f5dc6266df86 | p@chrX:160823859..160823870, + |
| 5.28e-50 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_bb5b5fc242076358f7b6f5dc6266df86 | p@chrX:160840025..160840037, + |
| 5.28e-50 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_bb5b5fc242076358f7b6f5dc6266df86 | p@chrX:160823859..160823870, + |
| 5.28e-50 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_bb5b5fc242076358f7b6f5dc6266df86 | p@chrX:160840048..160840057, + |
| 2.18e-47 | FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_1d958ff00dd227690f8c76dec4afa88d | p10@ECE1 |
| 2.18e-47 | FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_1d958ff00dd227690f8c76dec4afa88d | p10@ECE1 |
| 8.93e-47 | FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_8258e48c9680e6598c21b46c75e2bb02 | p4@ESM1 |
| 8.93e-47 | FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_8258e48c9680e6598c21b46c75e2bb02 | p4@ESM1 |
| 1.81e-45 | FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_d7911c7579fe93655fc1e128fe88ac5b | p2@ESM1 |
| 1.81e-45 | FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_d7911c7579fe93655fc1e128fe88ac5b | p2@ESM1 |
| 3.22e-45 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_0ac3ae82a0a1b09ad9bd06f22219f33b | p11@Fam198b |
| 3.22e-45 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_0ac3ae82a0a1b09ad9bd06f22219f33b | p11@Fam198b |
| 4.95e-45 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_329f7ed949643505b8bbabfa885f5834 | p@chr1:127574253..127574264, + |
| 4.95e-45 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_329f7ed949643505b8bbabfa885f5834 | p@chr1:127574253..127574264, + |
| 7.5e-45 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_e82d4f82a36a09a3f7a9201e007c32c1 | p7@Gpr39 |
| 7.5e-45 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_e82d4f82a36a09a3f7a9201e007c32c1 | p7@Gpr39 |
| 9.22e-45 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_8ed286593bcead8510ac331486fc916a | p11@Gpr39 |
| 9.22e-45 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_8ed286593bcead8510ac331486fc916a | p11@Gpr39 |
| 1.13e-44 | FFCP PHASE2:Mm9::chr17:78775126..78775139,+#_c3c450f114c829bf93b021ed92ea3625 | p@chr17:78775126..78775139, + |
| 1.13e-44 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_c3c450f114c829bf93b021ed92ea3625 | p@chrX:160839768..160839780, + |
| 1.13e-44 | FFCP PHASE1:Mm9::chr17:78775126..78775139,+#_c3c450f114c829bf93b021ed92ea3625 | p@chr17:78775126..78775139, + |
| 1.13e-44 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_c3c450f114c829bf93b021ed92ea3625 | p@chrX:160839768..160839780, + |
| 2.59e-44 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_0cf2b2bb4fd48ff1db5e04ddeb138bf4 | p8@Gpr39 |
| 2.59e-44 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_0cf2b2bb4fd48ff1db5e04ddeb138bf4 | p8@Gpr39 |
| 2.04e-43 | FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_6c47c0ca7a946bb02ff2e6f3d4d0c77e | p@chr11:128563283..128563297, - |
| 2.04e-43 | FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_6c47c0ca7a946bb02ff2e6f3d4d0c77e | p@chr11:128563283..128563297, - |
| 7.92e-43 | FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_49eead8e0d2f6bb0c502dd7a4d994069 | p@chr7:100773764..100773799, - |
| 7.92e-43 | FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_49eead8e0d2f6bb0c502dd7a4d994069 | p@chr7:100773764..100773799, - |
| 1.11e-42 | FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_dd13dd1947ea9f23dd112dae5e949cc1 | p@chr1:186946626..186946652, + |
| 1.11e-42 | FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_dd13dd1947ea9f23dd112dae5e949cc1 | p@chr1:186946626..186946652, + |
| 9.39e-42 | FFCP PHASE2:Hg19::chr16:86964992..86965035,-#_6f4624d56e97661d553a2eed6016063f | p@chr16:86964992..86965035, - |
| 9.39e-42 | FFCP PHASE1:Hg19::chr16:86964992..86965035,-#_6f4624d56e97661d553a2eed6016063f | p@chr16:86964992..86965035, - |
| 2.02e-41 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_465004f67cde9651607aebb114b49ea1 | p@chr11:128562673..128562716, - |
| 2.02e-41 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_465004f67cde9651607aebb114b49ea1 | p@chr11:128562673..128562716, - |
| 2.72e-41 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_aee8d44ea5b076212862fae1df2a556a | p@chr7:96658543..96658553, - |
| 2.72e-41 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_aee8d44ea5b076212862fae1df2a556a | p@chr7:96658543..96658553, - |
| 6.57e-41 | FFCP PHASE2:Hg19::chr4:10118075..10118107,-#_5ce5f2792b49035d8e3a397baf7517c7 | p5@WDR1 |
| 6.57e-41 | FFCP PHASE1:Hg19::chr4:10118075..10118107,-#_5ce5f2792b49035d8e3a397baf7517c7 | p5@WDR1 |
| 7.74e-41 | FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_6c1bb820c688c19c1902e14b928cfa74 | p@chr12:105863654..105863682, + |
| 7.74e-41 | FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_6c1bb820c688c19c1902e14b928cfa74 | p@chr12:105863654..105863682, + |
| 1.39e-40 | FFCP PHASE2:Hg19::chr4:10118034..10118074,-#_39a7e63161b40fc60610345f8e01f433 | p6@WDR1 |
| 1.39e-40 | FFCP PHASE1:Hg19::chr4:10118034..10118074,-#_39a7e63161b40fc60610345f8e01f433 | p6@WDR1 |
| 1.9e-40 | FFCP PHASE1:Hg19::chr7:100770466..100770499,+#_1501181ec66c5c929157487e96617588 | p2@SERPINE1 |
| 1.9e-40 | FFCP PHASE2:Hg19::chr7:100770466..100770499,+#_1501181ec66c5c929157487e96617588 | p2@SERPINE1 |
| 1.96e-40 | FFCP PHASE1:Hg19::chr7:100775170..100775232,+#_34d2b206a34afa4a6292f6fa83fef6a6 | p2@BX649164 |
| 1.96e-40 | FFCP PHASE2:Hg19::chr7:100775170..100775232,+#_34d2b206a34afa4a6292f6fa83fef6a6 | p2@BX649164 |
| 2.31e-40 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_ce5728614acc07870d8df26ec7293c13 | p@chr7:91081998..91082010, - |
| 2.31e-40 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_ce5728614acc07870d8df26ec7293c13 | p4@Il6st |
| 2.31e-40 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_ce5728614acc07870d8df26ec7293c13 | p@chr7:91081998..91082010, - |
| 2.31e-40 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_ce5728614acc07870d8df26ec7293c13 | p2@Il6 |
| 2.31e-40 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_ce5728614acc07870d8df26ec7293c13 | p2@Il6 |
| 2.31e-40 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_ce5728614acc07870d8df26ec7293c13 | p4@Il6st |
| 2.82e-40 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_1d4f5d416d376d8874a349037b271c3c | p@chr6:3753188..3753192, - |
| 2.82e-40 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_1d4f5d416d376d8874a349037b271c3c | p@chr6:3753188..3753192, - |
| 2.91e-40 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_5a6384637082e6273aa43d21c10a0bcb | p@chr10:67598037..67598049, - |
| 2.91e-40 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_5a6384637082e6273aa43d21c10a0bcb | p@chr10:67598037..67598049, - |
| 3.14e-40 | FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_911028847c6f530d0495c942042d6a9c | p@chr12:105863636..105863650, + |
| 3.14e-40 | FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_911028847c6f530d0495c942042d6a9c | p@chr12:105863636..105863650, + |
| 3.31e-40 | FFCP PHASE2:Hg19::chr16:128274..128286,+#_09858eb543323379947edbf75c55957d | p2@MPG |
| 3.31e-40 | FFCP PHASE1:Hg19::chr16:128274..128286,+#_09858eb543323379947edbf75c55957d | p2@MPG |
| 3.41e-40 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_1594f3cee123ba60655cbee2ce441e5a | p@chr18:52678391..52678395, - |
| 3.41e-40 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_1594f3cee123ba60655cbee2ce441e5a | p@chr18:52678391..52678395, - |
| 5.82e-40 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_ab65ba67fcca45bb285cfc09935b1619 | p@chr2:65009852..65009866, - |
| 5.82e-40 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_ab65ba67fcca45bb285cfc09935b1619 | p@chr2:65009852..65009866, - |
| 6.01e-40 | FFCP PHASE2:Mm9::chr15:6824301..6824306,-#_719889ee111a9c8206189462d7f52f35 | p5@Osmr |
| 6.01e-40 | FFCP PHASE1:Mm9::chr15:6824301..6824306,-#_719889ee111a9c8206189462d7f52f35 | p5@Osmr |
| 9.26e-40 | FFCP PHASE1:Hg19::chr7:100781252..100781342,+#_cbcdee23ff21410058742f108721edec | p@chr7:100781252..100781342, + |
| 9.26e-40 | FFCP PHASE2:Hg19::chr7:100781252..100781342,+#_cbcdee23ff21410058742f108721edec | p@chr7:100781252..100781342, + |
| 9.58e-40 | FFCP PHASE1:Hg19::chr7:100770437..100770464,+#_e4d7873c2a9e86e3fd4ba633138dbc65 | p3@SERPINE1 |
| 9.58e-40 | FFCP PHASE2:Hg19::chr7:100770437..100770464,+#_e4d7873c2a9e86e3fd4ba633138dbc65 | p3@SERPINE1 |
| 1.01e-39 | FFCP PHASE2:Hg19::chr7:100773698..100773743,+#_0f4dbfc4bf021fafc33a67592702ba6b | p@chr7:100773698..100773743, + |
| 1.01e-39 | FFCP PHASE1:Hg19::chr7:100773698..100773743,+#_0f4dbfc4bf021fafc33a67592702ba6b | p@chr7:100773698..100773743, + |
| 1.38e-39 | FFCP PHASE2:Hg19::chr5:150019857..150019868,+#_872328b560b2cc63ba89df380ad48037 | p18@SYNPO |
| 1.38e-39 | FFCP PHASE1:Hg19::chr5:150019857..150019868,+#_872328b560b2cc63ba89df380ad48037 | p18@SYNPO |
| 1.61e-39 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_e313023d1abbfdcf3f6e6b1473afbf85 | p@chr6:91222095..91222107, + |
| 1.61e-39 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_e313023d1abbfdcf3f6e6b1473afbf85 | p@chr6:91222095..91222107, + |
| 2.32e-39 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_fb940b6a968e8a986970ff7e50f2baf6 | p9@Kctd10 |
| 2.32e-39 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_fb940b6a968e8a986970ff7e50f2baf6 | p9@Kctd10 |
| 2.78e-39 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_0a81bbb24097df97838cc1e3e0a015cc | p6@Gpr39 |
| 2.78e-39 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_0a81bbb24097df97838cc1e3e0a015cc | p6@Gpr39 |
