CL:0002322: Difference between revisions
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|located_in= | |located_in= | ||
|name=embryonic stem cell | |name=embryonic stem cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-09-15T03:44:35Z | |obo_creation_date=2010-09-15T03:44:35Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:42, 12 September 2014
| Name: | embryonic stem cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A stem cell of embryonic origin." [GOC:dsd, GOC:tfm, ISBN:068340007X, PMID:18179856] | ||
| Xrefs: |
| ||
| Synonyms: | "ESC" EXACT [] | ||
| Comments: | This is an in vitro cell type and may be removed in future releases. These cells are reportedly SSEA-4-positive, CD73-negative, and CD324-positive. | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-15T03:44:35Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000034(stem cell),CL:0002321(embryonic cell) |
|---|
Children
| derives from: | FF:0101581 (embryonic stem cell line sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
- 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
- 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
- 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
- 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
- 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
- 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
- 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
- 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
- 12635-134F7 (H9 Embryoid body cells, melanocytic induction)
... further results Mouse (Mus musculus)
- 12626-134E7 (H9 Embryonic Stem cells, biol_rep1 (H9ES-1))
- 12627-134E8 (H9 Embryoid body cells, melanocytic induction)
- 12628-134E9 (H9 Embryoid body cells, melanocytic induction)
- 12629-134F1 (H9 Embryoid body cells, melanocytic induction)
- 12630-134F2 (H9 Embryoid body cells, melanocytic induction)
- 12631-134F3 (H9 Embryoid body cells, melanocytic induction)
- 12632-134F4 (H9 Embryoid body cells, melanocytic induction)
- 12633-134F5 (H9 Embryoid body cells, melanocytic induction)
- 12634-134F6 (H9 Embryoid body cells, melanocytic induction)
- 12635-134F7 (H9 Embryoid body cells, melanocytic induction)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002322 (embryonic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.45e-195 | FFCP PHASE1:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p@chr3:112145303..112145318, - |
| 2.45e-195 | FFCP PHASE1:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p2@ENST00000443844 |
| 2.45e-195 | FFCP PHASE2:Hg19::chr3:112145303..112145318,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p@chr3:112145303..112145318, - |
| 2.45e-195 | FFCP PHASE2:Hg19::chr1:53905039..53905072,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p2@ENST00000443844 |
| 2.45e-195 | FFCP PHASE2:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p3@ENST00000554286 |
| 2.45e-195 | FFCP PHASE1:Hg19::chr14:21175008..21175030,-#_4dc5e979cd1f8f9f17b7b2ffd393cfab | p3@ENST00000554286 |
| 2.34e-163 | FFCP PHASE2:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7 | p2@ENST00000554286 |
| 2.34e-163 | FFCP PHASE1:Hg19::chr14:21175070..21175084,-#_532a34e9366f7a80d7a8a972db2073c7 | p2@ENST00000554286 |
| 2.34e-163 | FFCP PHASE2:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7 | p1@ENST00000554286 |
| 2.34e-163 | FFCP PHASE1:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7 | p5@LECT1 |
| 2.34e-163 | FFCP PHASE1:Hg19::chr14:21175090..21175105,-#_532a34e9366f7a80d7a8a972db2073c7 | p1@ENST00000554286 |
| 2.34e-163 | FFCP PHASE2:Hg19::chr13:53314077..53314084,-#_532a34e9366f7a80d7a8a972db2073c7 | p5@LECT1 |
| 3.28e-163 | FFCP PHASE1:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5 | p3@ENST00000456949 |
| 3.28e-163 | FFCP PHASE2:Hg19::chr2:946449..946463,-#_bc6224dbecb194fbf23e2f45099002a5 | p3@ENST00000456949 |
| 1.5e-156 | FFCP PHASE1:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr19:19748353..19748362, - |
| 1.5e-156 | FFCP PHASE2:Hg19::chr19:19748353..19748362,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr19:19748353..19748362, - |
| 1.5e-156 | FFCP PHASE1:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr2:233286046..233286057, - |
| 1.5e-156 | FFCP PHASE2:Hg19::chr2:233286046..233286057,-#_f65e86b642cf4b66f9ed652f07e753f3 | p@chr2:233286046..233286057, - |
| 1.65e-140 | FFCP PHASE2:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7 | p@chr14:47573982..47573999, + |
| 1.65e-140 | FFCP PHASE1:Hg19::chr14:47573982..47573999,+#_a45b946a47f5314f13cf7f0a240ed8b7 | p@chr14:47573982..47573999, + |
| 1.65e-140 | FFCP PHASE1:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7 | p1@ENST00000443844 |
| 1.65e-140 | FFCP PHASE2:Hg19::chr1:53905204..53905220,-#_a45b946a47f5314f13cf7f0a240ed8b7 | p1@ENST00000443844 |
| 2.94e-140 | FFCP PHASE2:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461 | p@chr14:96459422..96459424, - |
| 2.94e-140 | FFCP PHASE1:Hg19::chr14:96459422..96459424,-#_c0d056a0c3a503358540ca7827c7c461 | p@chr14:96459422..96459424, - |
| 5.23e-140 | FFCP PHASE1:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fc | p5@DPPA4 |
| 5.23e-140 | FFCP PHASE2:Hg19::chr3:109049145..109049147,-#_1e3913d3660e8a3d9e583e8d391b33fc | p5@DPPA4 |
| 9.29e-140 | FFCP PHASE2:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5 | p@chr7:125564060..125564062, + |
| 9.29e-140 | FFCP PHASE1:Hg19::chr7:125564060..125564062,+#_f052a7e10a9a9b53d5424387fbf168f5 | p@chr7:125564060..125564062, + |
| 1.71e-125 | FFCP PHASE2:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8 | p@chrX:16595231..16595235, + |
| 1.71e-125 | FFCP PHASE1:Hg19::chrX:16595231..16595235,+#_7ad7dfd33919d49c288daba7e24953d8 | p@chrX:16595231..16595235, + |
| 6.25e-123 | FFCP PHASE1:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936 | p@chr19:55603889..55603900, - |
| 6.25e-123 | FFCP PHASE2:Hg19::chr19:55603889..55603900,-#_54284521a001e2f3177db5a32b972936 | p@chr19:55603889..55603900, - |
| 1.03e-122 | FFCP PHASE1:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aae | p@chr3:109045929..109045945, - |
| 1.03e-122 | FFCP PHASE2:Hg19::chr3:109045929..109045945,-#_0d7a632c7cef98dd06b48f70a7b11aae | p@chr3:109045929..109045945, - |
| 2.83e-122 | FFCP PHASE1:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527 | p16@ETV5 |
| 2.83e-122 | FFCP PHASE2:Hg19::chr3:185797682..185797689,-#_4307a1d068cd16c28d889290e8775527 | p16@ETV5 |
| 3.64e-122 | FFCP PHASE1:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8 | p@chr5:12625067..12625085, + |
| 3.64e-122 | FFCP PHASE2:Hg19::chr5:12625067..12625085,+#_85e13dd6e8643397844539d1e20c92a8 | p@chr5:12625067..12625085, + |
| 4.68e-122 | FFCP PHASE1:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98 | p@chr2:210073840..210073851, - |
| 4.68e-122 | FFCP PHASE2:Hg19::chr2:210073840..210073851,-#_e2379b7219546f9cf41432c145ccfc98 | p@chr2:210073840..210073851, - |
| 7.72e-122 | FFCP PHASE2:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fd | p1@HOXB1 |
| 7.72e-122 | FFCP PHASE1:Hg19::chr17:46608354..46608385,-#_aee9bdfba03ea50736bff098f9d6c4fd | p1@HOXB1 |
| 7.76e-118 | FFCP PHASE1:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1f | p4@ENST00000554286 |
| 7.76e-118 | FFCP PHASE2:Hg19::chr14:21175067..21175069,-#_97319ad1301df4b73cc441da1fc2ff1f | p4@ENST00000554286 |
| 1.21e-109 | FFCP PHASE1:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26 | p@chr2:233285967..233285976, - |
| 1.21e-109 | FFCP PHASE2:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26 | p@chr10:58982431..58982442, - |
| 1.21e-109 | FFCP PHASE2:Hg19::chr2:233285967..233285976,-#_d934384405965aa1d2135354f768ea26 | p@chr2:233285967..233285976, - |
| 1.21e-109 | FFCP PHASE1:Hg19::chr10:58982431..58982442,-#_d934384405965aa1d2135354f768ea26 | p@chr10:58982431..58982442, - |
| 1.21e-109 | FFCP PHASE1:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26 | p@chr2:233285930..233285938, - |
| 1.21e-109 | FFCP PHASE2:Hg19::chr2:233285930..233285938,-#_d934384405965aa1d2135354f768ea26 | p@chr2:233285930..233285938, - |
| 1.51e-109 | FFCP PHASE2:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95 | p@chrX:16594524..16594529, + |
| 1.51e-109 | FFCP PHASE2:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95 | p@chr10:135042855..135042873, + |
| 1.51e-109 | FFCP PHASE1:Hg19::chr10:135042855..135042873,+#_fbe3066dab819a3264a845dec939dd95 | p@chr10:135042855..135042873, + |
| 1.51e-109 | FFCP PHASE1:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95 | p@chr2:233285898..233285907, - |
| 1.51e-109 | FFCP PHASE1:Hg19::chrX:16594524..16594529,+#_fbe3066dab819a3264a845dec939dd95 | p@chrX:16594524..16594529, + |
| 1.51e-109 | FFCP PHASE2:Hg19::chr2:233285898..233285907,-#_fbe3066dab819a3264a845dec939dd95 | p@chr2:233285898..233285907, - |
| 2.37e-109 | FFCP PHASE1:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328 | p@chr19:36164312..36164325, + |
| 2.37e-109 | FFCP PHASE2:Hg19::chr19:36164312..36164325,+#_a701f83b97e865e207ae5ab0162c6328 | p@chr19:36164312..36164325, + |
| 2.37e-109 | FFCP PHASE2:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328 | p7@USP44 |
| 2.37e-109 | FFCP PHASE2:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328 | p@chr13:56156997..56157026, - |
| 2.37e-109 | FFCP PHASE1:Hg19::chr12:95942538..95942549,-#_a701f83b97e865e207ae5ab0162c6328 | p7@USP44 |
| 2.37e-109 | FFCP PHASE1:Hg19::chr13:56156997..56157026,-#_a701f83b97e865e207ae5ab0162c6328 | p@chr13:56156997..56157026, - |
| 7.24e-109 | FFCP PHASE1:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325d | p@chrX:33101294..33101324, - |
| 7.24e-109 | FFCP PHASE1:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325d | p@chr2:8016767..8016785, + |
| 7.24e-109 | FFCP PHASE2:Hg19::chr2:8016767..8016785,+#_79f4e4759080f0c6d0b48fbf675e325d | p@chr2:8016767..8016785, + |
| 7.24e-109 | FFCP PHASE2:Hg19::chrX:33101294..33101324,-#_79f4e4759080f0c6d0b48fbf675e325d | p@chrX:33101294..33101324, - |
| 9.05e-109 | FFCP PHASE1:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473f | p@chr2:233285959..233285964, - |
| 9.05e-109 | FFCP PHASE2:Hg19::chr2:233285959..233285964,-#_f092786b1faf3e21745fe18762d6473f | p@chr2:233285959..233285964, - |
| 9.05e-109 | FFCP PHASE2:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473f | p2@VENTX |
| 9.05e-109 | FFCP PHASE1:Hg19::chr10:135051422..135051430,+#_f092786b1faf3e21745fe18762d6473f | p2@VENTX |
| 1.13e-108 | FFCP PHASE1:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721677..59721683, - |
| 1.13e-108 | FFCP PHASE2:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721532..59721540, - |
| 1.13e-108 | FFCP PHASE1:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr20:12735430..12735434, + |
| 1.13e-108 | FFCP PHASE2:Hg19::chr20:12735430..12735434,+#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr20:12735430..12735434, + |
| 1.13e-108 | FFCP PHASE2:Hg19::chr12:59721677..59721683,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721677..59721683, - |
| 1.13e-108 | FFCP PHASE1:Hg19::chr12:59721532..59721540,-#_c91cf787c9e7ccc81c2602f6efd3151b | p@chr12:59721532..59721540, - |
| 1.77e-108 | FFCP PHASE2:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296 | p@chr12:97858979..97858990, + |
| 1.77e-108 | FFCP PHASE1:Hg19::chr12:97858979..97858990,+#_6c2e7eaa7bcb6da878f2c9b69a626296 | p@chr12:97858979..97858990, + |
| 2.76e-108 | FFCP PHASE1:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305 | p@chr4:187168395..187168407, - |
| 2.76e-108 | FFCP PHASE2:Hg19::chr4:187168395..187168407,-#_e47a4da52936b93e0822b4d8a20d8305 | p@chr4:187168395..187168407, - |
| 4.31e-108 | FFCP PHASE2:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360 | p@chr4:187163408..187163430, + |
| 4.31e-108 | FFCP PHASE1:Hg19::chr4:187163408..187163430,+#_ca8a45a44d46ad4558b361dd39f36360 | p@chr4:187163408..187163430, + |
| 3.96e-105 | FFCP PHASE1:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2f | p@chr19:56163789..56163799, + |
| 3.96e-105 | FFCP PHASE2:Hg19::chr19:56163789..56163799,+#_cdb861d8aa7030ea0ec69ac470680c2f | p@chr19:56163789..56163799, + |
| 5.18e-105 | FFCP PHASE2:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862 | p@chrX:16186799..16186803, - |
| 5.18e-105 | FFCP PHASE1:Hg19::chrX:16186799..16186803,-#_390dcbef3ab31b34961c8f6a1aba1862 | p@chrX:16186799..16186803, - |
| 8.85e-105 | FFCP PHASE2:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63a | p4@WNT1 |
| 8.85e-105 | FFCP PHASE1:Hg19::chr12:49372099..49372110,+#_d22fdfe93b6878ab3b217faf1705c63a | p4@WNT1 |
| 2.58e-104 | FFCP PHASE1:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874 | p22@EHBP1 |
| 2.58e-104 | FFCP PHASE2:Hg19::chr2:63271943..63271947,+#_3ead4f8028ae0363ec230ce703e28874 | p22@EHBP1 |
| 2.3e-99 | FFCP PHASE2:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9 | p1@ENST00000519695, p1@ENST00000524275 |
| 2.3e-99 | FFCP PHASE1:Hg19::chr8:132320836..132320868,+#_5b32168fe4af474e2c7a4c45958b76b9 | p1@ENST00000519695, p1@ENST00000524275 |
| 4.22e-99 | FFCP PHASE2:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261c | p4@LECT1 |
| 4.22e-99 | FFCP PHASE1:Hg19::chr13:53314109..53314157,-#_e759737ead8090bc2645da3561ab261c | p4@LECT1 |
| 6.32e-99 | FFCP PHASE1:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5 | p@chr18:29399308..29399314, + |
| 6.32e-99 | FFCP PHASE2:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5 | p@chr3:32858527..32858538, + |
| 6.32e-99 | FFCP PHASE2:Hg19::chr18:29399308..29399314,+#_832a043cc177566762435a80008377a5 | p@chr18:29399308..29399314, + |
| 6.32e-99 | FFCP PHASE1:Hg19::chr3:32858527..32858538,+#_832a043cc177566762435a80008377a5 | p@chr3:32858527..32858538, + |
| 9.46e-99 | FFCP PHASE2:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9 | p@chr6:131624969..131624980, + |
| 9.46e-99 | FFCP PHASE1:Hg19::chr6:131624969..131624980,+#_15eda5a0a3fcb3d2bf3a1543730345a9 | p@chr6:131624969..131624980, + |
