CL:0002328: Difference between revisions

Latest revision as of 16:42, 12 September 2014

Name:

bronchial epithelial cell

Namespace:

FANTOM

Definition:

"An epithelial cell of the bronchus." [GOC:tfm]

Xrefs:

Expandlinks:

Created by:

tmeehan

Creation date:

2010-09-20T02:00:00Z

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0002202(epithelial cell of tracheobronchial tree)
part_of:	UBERON:0002185(bronchus),UBERON:0002031(epithelium of bronchus),UBERON:0002185(bronchus)

Children

derives from:	FF:0000015 (human bronchial epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

11453-119A4 (Bronchial Epithelial Cell, donor4)
11457-119A8 (Bronchial Epithelial Cell, donor5)
11461-119B3 (Bronchial Epithelial Cell, donor6)
11511-119G8 (Bronchial Epithelial Cell, donor1)
11591-120G7 (Bronchial Epithelial Cell, donor2)
11672-122G7 (Bronchial Epithelial Cell, donor3)
11769-123I5 (Bronchial Epithelial Cell, donor7)

Mouse (Mus musculus)

11453-119A4 (Bronchial Epithelial Cell, donor4)
11457-119A8 (Bronchial Epithelial Cell, donor5)
11461-119B3 (Bronchial Epithelial Cell, donor6)
11511-119G8 (Bronchial Epithelial Cell, donor1)
11591-120G7 (Bronchial Epithelial Cell, donor2)
11672-122G7 (Bronchial Epithelial Cell, donor3)
11769-123I5 (Bronchial Epithelial Cell, donor7)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002328 (bronchial epithelial cell), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
1.71e-84	FFCP PHASE1:Hg19::chr3:189632708..189632721,-	p@chr3:189632708..189632721, -
1.71e-84	FFCP PHASE2:Hg19::chr3:189632708..189632721,-	p@chr3:189632708..189632721, -
2.4e-66	FFCP PHASE1:Hg19::chr1:209823455..209823467,-	p@chr1:209823455..209823467, -
2.4e-66	FFCP PHASE2:Hg19::chr1:209823455..209823467,-	p@chr1:209823455..209823467, -
3.13e-50	FFCP PHASE1:Hg19::chr1:95088552..95088567,+	p@chr1:95088552..95088567, +
3.13e-50	FFCP PHASE2:Hg19::chr1:95088552..95088567,+	p@chr1:95088552..95088567, +
1.03e-46	FFCP PHASE1:Hg19::chr1:3591362..3591369,-	p@chr1:3591362..3591369, -
1.03e-46	FFCP PHASE2:Hg19::chr1:3591362..3591369,-	p@chr1:3591362..3591369, -
5.0e-45	FFCP PHASE1:Hg19::chr2:113830230..113830233,-	p@chr2:113830230..113830233, -
5.0e-45	FFCP PHASE2:Hg19::chr2:113830230..113830233,-	p@chr2:113830230..113830233, -
1.92e-43	FFCP PHASE2:Hg19::chr10:73679250..73679255,-	p@chr10:73679250..73679255, -
1.92e-43	FFCP PHASE1:Hg19::chr10:73679250..73679255,-	p@chr10:73679250..73679255, -
7.6e-41	FFCP PHASE1:Hg19::chr1:9953308..9953320,-	p9@CTNNBIP1
7.6e-41	FFCP PHASE2:Hg19::chr1:9953308..9953320,-	p9@CTNNBIP1
1.49e-38	FFCP PHASE2:Hg19::chr17:48611912..48611919,+	p7@EPN3
1.49e-38	FFCP PHASE1:Hg19::chr17:48611912..48611919,+	p7@EPN3
1.62e-38	FFCP PHASE2:Hg19::chr1:95089255..95089279,-	p1@ENST00000435559
1.62e-38	FFCP PHASE1:Hg19::chr1:95089255..95089279,-	p1@ENST00000435559
1.8e-38	FFCP PHASE1:Hg19::chr7:135018332..135018336,+	p@chr7:135018332..135018336, +
1.8e-38	FFCP PHASE2:Hg19::chr7:135018332..135018336,+	p@chr7:135018332..135018336, +
3.06e-38	FFCP PHASE1:Hg19::chr17:48611940..48611947,+	p5@EPN3
3.06e-38	FFCP PHASE2:Hg19::chr17:48611940..48611947,+	p5@EPN3
5.76e-38	FFCP PHASE1:Hg19::chr2:74211227..74211238,+	p@chr2:74211227..74211238, +
5.76e-38	FFCP PHASE2:Hg19::chr2:74211227..74211238,+	p@chr2:74211227..74211238, +
2.35e-36	FFCP PHASE2:Hg19::chr17:38179639..38179652,-	p7@MED24
2.35e-36	FFCP PHASE1:Hg19::chr17:38179639..38179652,-	p7@MED24
2.53e-35	FFCP PHASE1:Hg19::chr20:14248741..14248745,-	p@chr20:14248741..14248745, -
2.53e-35	FFCP PHASE2:Hg19::chr20:14248741..14248745,-	p@chr20:14248741..14248745, -
1.96e-34	FFCP PHASE1:Hg19::chr17:38652393..38652403,-	p16@TNS4
1.96e-34	FFCP PHASE2:Hg19::chr17:38652393..38652403,-	p16@TNS4
2.75e-34	FFCP PHASE1:Hg19::chr1:153540420..153540455,+	p@chr1:153540420..153540455, +
2.75e-34	FFCP PHASE2:Hg19::chr1:153540420..153540455,+	p@chr1:153540420..153540455, +
3.07e-34	FFCP PHASE1:Hg19::chr12:52844247..52844256,-	p@chr12:52844247..52844256, -
3.07e-34	FFCP PHASE2:Hg19::chr12:52844247..52844256,-	p@chr12:52844247..52844256, -
5.51e-34	FFCP PHASE1:Hg19::chr11:94427497..94427507,-	p@chr11:94427497..94427507, -
5.51e-34	FFCP PHASE2:Hg19::chr11:94427497..94427507,-	p@chr11:94427497..94427507, -
5.96e-34	FFCP PHASE1:Hg19::chr1:27181551..27181558,-	p@chr1:27181551..27181558, -
5.96e-34	FFCP PHASE2:Hg19::chr1:27181551..27181558,-	p@chr1:27181551..27181558, -
6.76e-34	FFCP PHASE2:Hg19::chr1:183133608..183133625,-	p@chr1:183133608..183133625, -
6.76e-34	FFCP PHASE1:Hg19::chr1:183133608..183133625,-	p@chr1:183133608..183133625, -
1.27e-33	FFCP PHASE1:Hg19::chr3:190252374..190252383,-	p@chr3:190252374..190252383, -
1.27e-33	FFCP PHASE2:Hg19::chr3:190252374..190252383,-	p@chr3:190252374..190252383, -
1.5e-33	FFCP PHASE1:Hg19::chr8:29414184..29414190,+	p@chr8:29414184..29414190, +
1.5e-33	FFCP PHASE2:Hg19::chr8:29414184..29414190,+	p@chr8:29414184..29414190, +
6.66e-33	FFCP PHASE1:Hg19::chr14:67879076..67879080,+	p@chr14:67879076..67879080, +
6.66e-33	FFCP PHASE2:Hg19::chr14:67879076..67879080,+	p@chr14:67879076..67879080, +
1.14e-32	FFCP PHASE2:Hg19::chr1:209807970..209807983,-	p@chr1:209807970..209807983, -
1.14e-32	FFCP PHASE1:Hg19::chr1:209807970..209807983,-	p@chr1:209807970..209807983, -
2.68e-32	FFCP PHASE2:Hg19::chr6:83075367..83075383,-	p@chr6:83075367..83075383, -
2.68e-32	FFCP PHASE1:Hg19::chr6:83075367..83075383,-	p@chr6:83075367..83075383, -
2.95e-31	FFCP PHASE1:Hg19::chr4:15937715..15937733,-	p@chr4:15937715..15937733, -
2.95e-31	FFCP PHASE2:Hg19::chr4:15937715..15937733,-	p@chr4:15937715..15937733, -
6.66e-31	FFCP PHASE1:Hg19::chr9:26747081..26747110,+	p@chr9:26747081..26747110, +
6.66e-31	FFCP PHASE2:Hg19::chr9:26747081..26747110,+	p@chr9:26747081..26747110, +
1.0e-30	FFCP PHASE2:Hg19::chr11:120008883..120008884,-	p16@TRIM29
1.0e-30	FFCP PHASE1:Hg19::chr11:120008883..120008884,-	p16@TRIM29
1.09e-30	FFCP PHASE1:Hg19::chr13:61507880..61507904,-	p@chr13:61507880..61507904, -
1.09e-30	FFCP PHASE2:Hg19::chr13:61507880..61507904,-	p@chr13:61507880..61507904, -
1.47e-30	FFCP PHASE1:Hg19::chr1:152475755..152475761,+	p@chr1:152475755..152475761, +
1.47e-30	FFCP PHASE2:Hg19::chr1:152475755..152475761,+	p@chr1:152475755..152475761, +
1.66e-30	FFCP PHASE1:Hg19::chr17:39777017..39777027,+	p@chr17:39777017..39777027, +
1.66e-30	FFCP PHASE2:Hg19::chr17:39777017..39777027,+	p@chr17:39777017..39777027, +
1.71e-30	FFCP PHASE2:Hg19::chr4:82554167..82554171,+	p@chr4:82554167..82554171, +
1.71e-30	FFCP PHASE1:Hg19::chr4:82554167..82554171,+	p@chr4:82554167..82554171, +
2.24e-30	FFCP PHASE2:Hg19::chr1:209825932..209825936,-	p10@LAMB3
2.24e-30	FFCP PHASE1:Hg19::chr1:209825932..209825936,-	p10@LAMB3
3.1e-30	FFCP PHASE2:Hg19::chr15:76443020..76443024,-	p@chr15:76443020..76443024, -
3.1e-30	FFCP PHASE1:Hg19::chr15:76443020..76443024,-	p@chr15:76443020..76443024, -
3.11e-30	FFCP PHASE2:Hg19::chr17:39780624..39780631,-	p8@KRT17
3.11e-30	FFCP PHASE1:Hg19::chr17:39780624..39780631,-	p8@KRT17
5.61e-30	FFCP PHASE1:Hg19::chr1:156720278..156720286,+	p15@PRCC
5.61e-30	FFCP PHASE2:Hg19::chr1:156720278..156720286,+	p15@PRCC
8.74e-30	FFCP PHASE2:Hg19::chr14:94426721..94426726,+	p@chr14:94426721..94426726, +
8.74e-30	FFCP PHASE1:Hg19::chr14:94426721..94426726,+	p@chr14:94426721..94426726, +
1.34e-29	FFCP PHASE2:Hg19::chr12:52913881..52913889,+	p@chr12:52913881..52913889, +
1.34e-29	FFCP PHASE1:Hg19::chr12:52913881..52913889,+	p@chr12:52913881..52913889, +
1.63e-29	FFCP PHASE2:Hg19::chr17:73719483..73719489,-	p@chr17:73719483..73719489, -
1.63e-29	FFCP PHASE1:Hg19::chr17:73719483..73719489,-	p@chr17:73719483..73719489, -
1.98e-29	FFCP PHASE2:Hg19::chr1:209827520..209827532,-	p@chr1:209827520..209827532, -
1.98e-29	FFCP PHASE1:Hg19::chr1:209827520..209827532,-	p@chr1:209827520..209827532, -
2.64e-29	FFCP PHASE1:Hg19::chr12:56332022..56332030,+	p17@DGKA
2.64e-29	FFCP PHASE2:Hg19::chr12:56332022..56332030,+	p17@DGKA
3.27e-28	FFCP PHASE2:Hg19::chr17:38657781..38657786,-	p15@TNS4
3.27e-28	FFCP PHASE1:Hg19::chr17:38657781..38657786,-	p15@TNS4
4.32e-28	FFCP PHASE2:Hg19::chr1:55436540..55436544,-	p@chr1:55436540..55436544, -
4.32e-28	FFCP PHASE1:Hg19::chr1:55436540..55436544,-	p@chr1:55436540..55436544, -
6.24e-28	FFCP PHASE1:Hg19::chr1:153534013..153534025,+	p@chr1:153534013..153534025, +
6.24e-28	FFCP PHASE2:Hg19::chr1:153534013..153534025,+	p@chr1:153534013..153534025, +
8.22e-28	FFCP PHASE1:Hg19::chr17:39768786..39768828,-	p2@KRT16
8.22e-28	FFCP PHASE2:Hg19::chr17:39768786..39768828,-	p2@KRT16
1.22e-27	FFCP PHASE2:Hg19::chr2:70581573..70581577,-	p@chr2:70581573..70581577, -
1.22e-27	FFCP PHASE1:Hg19::chr1:153587360..153587377,-	p@chr1:153587360..153587377, -
1.22e-27	FFCP PHASE1:Hg19::chr1:44446555..44446566,+	p16@B4GALT2
1.22e-27	FFCP PHASE1:Hg19::chr19:48101913..48101916,-	p@chr19:48101913..48101916, -
1.22e-27	FFCP PHASE2:Hg19::chr1:153587360..153587377,-	p@chr1:153587360..153587377, -
1.22e-27	FFCP PHASE2:Hg19::chr1:44446555..44446566,+	p16@B4GALT2
1.22e-27	FFCP PHASE2:Hg19::chr19:48101913..48101916,-	p@chr19:48101913..48101916, -
1.22e-27	FFCP PHASE1:Hg19::chr2:70581573..70581577,-	p@chr2:70581573..70581577, -
1.39e-27	FFCP PHASE1:Hg19::chr2:20402306..20402318,-	p@chr2:20402306..20402318, -
1.39e-27	FFCP PHASE1:Hg19::chr1:46647115..46647118,-	p@chr1:46647115..46647118, -

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=bronchial epithelial cell
-|namespace=cell
+|namespace=FANTOM
 |obo_creation_date=2010-09-20T02:00:00Z
 |part_of=UBERON:0002185;;UBERON:0002031;;UBERON:0002185

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Latest revision as of 16:42, 12 September 2014

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