CL:0002436: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=mature CD4 single-positive thymocyte | |name=mature CD4 single-positive thymocyte | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-10-21T03:31:19Z | |obo_creation_date=2010-10-21T03:31:19Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:43, 12 September 2014
| Name: | mature CD4 single-positive thymocyte |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A mature CD4-positive, CD8-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html] |
| Synonyms: | "T.4SP24-.Th" RELATED [] |
| Created by: | tmeehan |
| Creation date: | 2010-10-21T03:31:19Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000624(CD4-positive, alpha-beta T cell) |
|---|---|
| develops_from: | CL:0002432(CD24-positive, CD4 single-positive thymocyte) |
Children
| develops from: | CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002436 (mature CD4 single-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_a79e0388a4ed513453c8eb43eb3f18aa | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_a79e0388a4ed513453c8eb43eb3f18aa | p@chr2:162762361..162762364, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_a79e0388a4ed513453c8eb43eb3f18aa | p4@APOBEC4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_a79e0388a4ed513453c8eb43eb3f18aa | p4@APOBEC4 |
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_81d03cdbef800edbb850a6dfb49a5140 | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_81d03cdbef800edbb850a6dfb49a5140 | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_81d03cdbef800edbb850a6dfb49a5140 | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_81d03cdbef800edbb850a6dfb49a5140 | p@chrX:54476786..54476810, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_dfa71f9cec0d55b8e459de342fdd0696 | p@chr16:52032670..52032685, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_dfa71f9cec0d55b8e459de342fdd0696 | p@chr16:52032670..52032685, + |
| 2.41e-74 | FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_c7a4999073843d882c35a05af91066f8 | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_c7a4999073843d882c35a05af91066f8 | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_c7a4999073843d882c35a05af91066f8 | p1@ENSMUST00000103701 |
| 2.41e-74 | FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_c7a4999073843d882c35a05af91066f8 | p1@ENSMUST00000103701 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_84eb6be36662725ae25188fb96dce124 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_84eb6be36662725ae25188fb96dce124 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_84eb6be36662725ae25188fb96dce124 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_84eb6be36662725ae25188fb96dce124 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_84eb6be36662725ae25188fb96dce124 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_84eb6be36662725ae25188fb96dce124 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_84eb6be36662725ae25188fb96dce124 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_84eb6be36662725ae25188fb96dce124 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_84eb6be36662725ae25188fb96dce124 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_84eb6be36662725ae25188fb96dce124 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_84eb6be36662725ae25188fb96dce124 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_84eb6be36662725ae25188fb96dce124 | p@chr14:54827490..54827502, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_6edfede35b362f40018123e441c607c0 | p17@ANXA1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_6edfede35b362f40018123e441c607c0 | p17@ANXA1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_700a470422c0f7aa10e31b536021925f | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_700a470422c0f7aa10e31b536021925f | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_700a470422c0f7aa10e31b536021925f | p@chr11:118209514..118209525, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_700a470422c0f7aa10e31b536021925f | p@chr20:37493438..37493456, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_700a470422c0f7aa10e31b536021925f | p@chr2:204816181..204816219, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_700a470422c0f7aa10e31b536021925f | p@chr2:204816181..204816219, - |
| 1.05e-65 | FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_3d04ddbbf868cbae74032f12f876be72 | p@chr14:53242248..53242261, + |
| 1.05e-65 | FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_3d04ddbbf868cbae74032f12f876be72 | p@chr14:53242248..53242261, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_8cbd18084db66811be66688e483b7cad | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 1.74e-65 | FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_8cbd18084db66811be66688e483b7cad | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 2.25e-65 | FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_24867a2da293b64dc1da76ac81cb2cf5 | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_24867a2da293b64dc1da76ac81cb2cf5 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_24867a2da293b64dc1da76ac81cb2cf5 | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_24867a2da293b64dc1da76ac81cb2cf5 | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_24867a2da293b64dc1da76ac81cb2cf5 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_24867a2da293b64dc1da76ac81cb2cf5 | p@chr5:123465978..123465989, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_13730cc27c675268d69a5905c619e7c0 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_13730cc27c675268d69a5905c619e7c0 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_13730cc27c675268d69a5905c619e7c0 | p@chr6:41504409..41504422, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_13730cc27c675268d69a5905c619e7c0 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_13730cc27c675268d69a5905c619e7c0 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_13730cc27c675268d69a5905c619e7c0 | p@chr6:41504409..41504422, - |
| 3.74e-65 | FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_2f3ba2070dccbfaa048be716a8105075 | p@chr4:32328217..32328228, - |
| 3.74e-65 | FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_2f3ba2070dccbfaa048be716a8105075 | p@chr4:32328217..32328228, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_e9049dee7fbd2e0d434c31a777dd7368 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_e9049dee7fbd2e0d434c31a777dd7368 | p@chr5:123465955..123465966, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_e9049dee7fbd2e0d434c31a777dd7368 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_e9049dee7fbd2e0d434c31a777dd7368 | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_e9049dee7fbd2e0d434c31a777dd7368 | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_e9049dee7fbd2e0d434c31a777dd7368 | p@chr5:123465955..123465966, - |
| 1.0e-60 | FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_2f34764bcfe69d0b222ec153ac49c088 | p@chr2:11097490..11097500, + |
| 1.0e-60 | FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_2f34764bcfe69d0b222ec153ac49c088 | p@chr2:11097490..11097500, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_58c0356f0b2a39fd9e86028d34647201 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_58c0356f0b2a39fd9e86028d34647201 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_58c0356f0b2a39fd9e86028d34647201 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_58c0356f0b2a39fd9e86028d34647201 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_58c0356f0b2a39fd9e86028d34647201 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_58c0356f0b2a39fd9e86028d34647201 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_58c0356f0b2a39fd9e86028d34647201 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_58c0356f0b2a39fd9e86028d34647201 | p@chr12:70398221..70398232, - |
| 1.77e-60 | FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_84bec6b46911e9ee9f283535b58ed6e9 | p1@ENSMUST00000103582 |
| 1.77e-60 | FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_84bec6b46911e9ee9f283535b58ed6e9 | p1@ENSMUST00000103582 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_0fa41ae9f2ed821056bf41d37e9ff594 | p@chr2:73290853..73290866, + |
| 2.34e-60 | FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_0fa41ae9f2ed821056bf41d37e9ff594 | p@chr2:73290853..73290866, + |
| 4.1e-60 | FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_27a0b2b91a865b3637329deb830ac519 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_27a0b2b91a865b3637329deb830ac519 | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_27a0b2b91a865b3637329deb830ac519 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_27a0b2b91a865b3637329deb830ac519 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_27a0b2b91a865b3637329deb830ac519 | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_27a0b2b91a865b3637329deb830ac519 | p8@Folr4 |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_59674b8405a3590b80c2c1c97c9bc329 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_59674b8405a3590b80c2c1c97c9bc329 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_59674b8405a3590b80c2c1c97c9bc329 | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_59674b8405a3590b80c2c1c97c9bc329 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_59674b8405a3590b80c2c1c97c9bc329 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_59674b8405a3590b80c2c1c97c9bc329 | p@chr11:87558695..87558707, + |
| 1.09e-58 | FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_eef3973b5faa7a3aac1ad4b3c0236b2f | p@chr4:32339235..32339263, + |
| 1.09e-58 | FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_eef3973b5faa7a3aac1ad4b3c0236b2f | p@chr4:32339235..32339263, + |
| 1.71e-58 | FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_e5f3a143d66462122670341acbcd19da | p5@Cd6 |
| 1.71e-58 | FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_e5f3a143d66462122670341acbcd19da | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_e5f3a143d66462122670341acbcd19da | p3@uc007ytl.1 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_e5f3a143d66462122670341acbcd19da | p5@Cd6 |
| 2.15e-58 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_adac4f78c85a30a46e3513f20e801c68 | p1@ENSMUST00000103733 |
| 2.15e-58 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_adac4f78c85a30a46e3513f20e801c68 | p1@ENSMUST00000103733 |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_1b28ada65781bbb7749a1956f8c2ca65 | p3@Tnfrsf25 |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_1b28ada65781bbb7749a1956f8c2ca65 | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_1b28ada65781bbb7749a1956f8c2ca65 | p@chr4:32339511..32339518, + |
| 2.69e-58 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_1b28ada65781bbb7749a1956f8c2ca65 | p3@Tnfrsf25 |
| 3.38e-58 | FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_d4499e2c67c28bb15e097b47d75fdee1 | p@chr6:48656532..48656548, + |
| 3.38e-58 | FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_d4499e2c67c28bb15e097b47d75fdee1 | p@chr6:48656532..48656548, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr13:30878436..30878443,+#_1496aab558c566b29afec36a74703bba | p@chr13:30878436..30878443, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr11:33948971..33948984,+#_1496aab558c566b29afec36a74703bba | p@chr11:33948971..33948984, + |
