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CL:0002618: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=endothelial cell of umbilical vein
|name=endothelial cell of umbilical vein
|namespace=cell
|namespace=FANTOM
|obo_creation_date=2011-03-14T11:36:51Z
|obo_creation_date=2011-03-14T11:36:51Z
|part_of=UBERON:0002066
|part_of=UBERON:0002066

Latest revision as of 16:46, 12 September 2014

Name:endothelial cell of umbilical vein
Namespace:FANTOM
Definition:"An endothelial cell of the umbilical vein." [GOC:tfm]
Xrefs:
links:
BTO:0004296
Created by:tmeehan
Creation date:2011-03-14T11:36:51Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002543(vein endothelial cell)
part_of:UBERON:0002066(umbilical vein)



Children


derives from:FF:0000247 (human endothelial cell of umbilical vein sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
  • 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
  • 11400-118D5 (Endothelial Cells - Umbilical vein, donor3)

Mouse (Mus musculus)

  • 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
  • 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
  • 11400-118D5 (Endothelial Cells - Umbilical vein, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002618 (endothelial cell of umbilical vein), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data