UBERON:0001744: Difference between revisions

Latest revision as of 17:20, 12 September 2014

lymphoid tissue

Namespace:

FANTOM

Definition:

"Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]

Xrefs:

Expandlinks:

Synonyms:

"lymphatic tissue" EXACT []
"lymphocytic tissue" EXACT []

Comments:

This class was created automatically from a combination of ontologies

Alt_id:

UBERON:FMA_55220-MA_0002436

Subset:

uberon_slim

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0000479(tissue)
part_of:	UBERON:0002193(hemolymphoid system),UBERON:0002465(lymphoid system)

Children

is a:	UBERON:0012069 (epithelium-associated lymphoid tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10047-101G2 (tonsil, adult, pool1)
10261-104C9
10262-104D1 (Follicle Associated Epithelium, pool2)
10263-104D2 (Follicle Associated Epithelium, pool3)

Mouse (Mus musculus)

10047-101G2 (tonsil, adult, pool1)
10261-104C9
10262-104D1 (Follicle Associated Epithelium, pool2)
10263-104D2 (Follicle Associated Epithelium, pool3)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001744 (lymphoid tissue), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
5.42e-195	FFCP PHASE2:Hg19::chr19:5850872..5850893,-	p@chr19:5850872..5850893, -
5.42e-195	FFCP PHASE2:Hg19::chr16:12334592..12334599,+	p@chr16:12334592..12334599, +
5.42e-195	FFCP PHASE2:Hg19::chr14:107049312..107049315,-	p2@IGHV3-53
5.42e-195	FFCP PHASE2:Hg19::chr2:89459813..89459818,-	p1@IGKV6-21
5.42e-195	FFCP PHASE2:Hg19::chr12:53200416..53200421,+	p7@CU692075
5.42e-195	FFCP PHASE1:Hg19::chr16:12334592..12334599,+	p@chr16:12334592..12334599, +
5.42e-195	FFCP PHASE2:Hg19::chr16:12337006..12337010,+	p@chr16:12337006..12337010, +
5.42e-195	FFCP PHASE1:Hg19::chr14:107049312..107049315,-	p2@IGHV3-53
5.42e-195	FFCP PHASE1:Hg19::chr2:89459813..89459818,-	p1@IGKV6-21
5.42e-195	FFCP PHASE1:Hg19::chr20:21684387..21684390,-	p2@ENST00000424377
5.42e-195	FFCP PHASE1:Hg19::chr16:12337006..12337010,+	p@chr16:12337006..12337010, +
5.42e-195	FFCP PHASE1:Hg19::chr19:5850872..5850893,-	p@chr19:5850872..5850893, -
5.42e-195	FFCP PHASE1:Hg19::chr12:53200416..53200421,+	p7@CU692075
5.42e-195	FFCP PHASE2:Hg19::chr20:21684387..21684390,-	p2@ENST00000424377
9.37e-99	FFCP PHASE1:Hg19::chr7:25361115..25361117,+	p@chr7:25361115..25361117, +
9.37e-99	FFCP PHASE1:Hg19::chr11:1249994..1249999,+	p30@MUC5B
9.37e-99	FFCP PHASE1:Hg19::chr6:168095835..168095838,-	p@chr6:168095835..168095838, -
9.37e-99	FFCP PHASE2:Hg19::chr19:14662395..14662414,+	p@chr19:14662395..14662414, +
9.37e-99	FFCP PHASE1:Hg19::chr20:31611186..31611191,+	p10@BPIFB6
9.37e-99	FFCP PHASE2:Hg19::chr20:31611454..31611461,+	p8@BPIFB6
9.37e-99	FFCP PHASE2:Hg19::chr11:1249994..1249999,+	p30@MUC5B
9.37e-99	FFCP PHASE2:Hg19::chr7:25361115..25361117,+	p@chr7:25361115..25361117, +
9.37e-99	FFCP PHASE1:Hg19::chr19:14662395..14662414,+	p@chr19:14662395..14662414, +
9.37e-99	FFCP PHASE1:Hg19::chr11:1263622..1263627,+	p@chr11:1263622..1263627, +
9.37e-99	FFCP PHASE2:Hg19::chr20:31611186..31611191,+	p10@BPIFB6
9.37e-99	FFCP PHASE2:Hg19::chr6:168095835..168095838,-	p@chr6:168095835..168095838, -
9.37e-99	FFCP PHASE2:Hg19::chr11:1263622..1263627,+	p@chr11:1263622..1263627, +
9.37e-99	FFCP PHASE1:Hg19::chr20:31611454..31611461,+	p8@BPIFB6
2.55e-98	FFCP PHASE1:Hg19::chr20:36694529..36694537,+	p30@RPRD1B
2.55e-98	FFCP PHASE1:Hg19::chr12:52478564..52478569,+	p@chr12:52478564..52478569, +
2.55e-98	FFCP PHASE1:Hg19::chr10:135337234..135337244,-	p@chr10:135337234..135337244, -
2.55e-98	FFCP PHASE1:Hg19::chr4:8437851..8437881,+	p6@METTL19
2.55e-98	FFCP PHASE1:Hg19::chr11:1263382..1263385,+	p@chr11:1263382..1263385, +
2.55e-98	FFCP PHASE2:Hg19::chr10:135337234..135337244,-	p@chr10:135337234..135337244, -
2.55e-98	FFCP PHASE2:Hg19::chr16:70602961..70602972,+	p@chr16:70602961..70602972, +
2.55e-98	FFCP PHASE2:Hg19::chr12:52478564..52478569,+	p@chr12:52478564..52478569, +
2.55e-98	FFCP PHASE1:Hg19::chr11:1260725..1260734,+	p@chr11:1260725..1260734, +
2.55e-98	FFCP PHASE2:Hg19::chr11:1263382..1263385,+	p@chr11:1263382..1263385, +
2.55e-98	FFCP PHASE2:Hg19::chr4:8437851..8437881,+	p6@METTL19
2.55e-98	FFCP PHASE2:Hg19::chr20:36694529..36694537,+	p30@RPRD1B
2.55e-98	FFCP PHASE2:Hg19::chr11:1260725..1260734,+	p@chr11:1260725..1260734, +
2.55e-98	FFCP PHASE1:Hg19::chr16:70602961..70602972,+	p@chr16:70602961..70602972, +
1.87e-86	FFCP PHASE2:Mm9::chr6:69701328..69701342,-	p1@ENSMUST00000114212
1.87e-86	FFCP PHASE2:Mm9::chr2:63059909..63059910,+	p@chr2:63059909..63059910, +
1.87e-86	FFCP PHASE2:Mm9::chr9:69086930..69086933,+	p@chr9:69086930..69086933, +
1.87e-86	FFCP PHASE2:Mm9::chr6:69785263..69785268,-	p@chr6:69785263..69785268, -
1.87e-86	FFCP PHASE1:Mm9::chr12:116051009..116051016,-	p@chr12:116051009..116051016, -
1.87e-86	FFCP PHASE1:Mm9::chr2:63059909..63059910,+	p@chr2:63059909..63059910, +
1.87e-86	FFCP PHASE1:Mm9::chr6:69701328..69701342,-	p1@ENSMUST00000114212
1.87e-86	FFCP PHASE1:Mm9::chr12:115974938..115974945,-	p@chr12:115974938..115974945, -
1.87e-86	FFCP PHASE1:Mm9::chr2:14201203..14201212,+	p@chr2:14201203..14201212, +
1.87e-86	FFCP PHASE1:Mm9::chr9:69086930..69086933,+	p@chr9:69086930..69086933, +
1.87e-86	FFCP PHASE1:Mm9::chr6:69785263..69785268,-	p@chr6:69785263..69785268, -
1.87e-86	FFCP PHASE2:Mm9::chr2:14201203..14201212,+	p@chr2:14201203..14201212, +
1.87e-86	FFCP PHASE1:Mm9::chr19:38060099..38060102,+	p@chr19:38060099..38060102, +
1.87e-86	FFCP PHASE2:Mm9::chr8:23117055..23117056,-	p@chr8:23117055..23117056, -
1.87e-86	FFCP PHASE1:Mm9::chr12:115979100..115979103,-	p@chr12:115979100..115979103, -
1.87e-86	FFCP PHASE2:Mm9::chr19:38060099..38060102,+	p@chr19:38060099..38060102, +
1.87e-86	FFCP PHASE2:Mm9::chr12:116051009..116051016,-	p@chr12:116051009..116051016, -
1.87e-86	FFCP PHASE2:Mm9::chr12:115974938..115974945,-	p@chr12:115974938..115974945, -
1.87e-86	FFCP PHASE1:Mm9::chr17:59564142..59564144,+	p@chr17:59564142..59564144, +
1.87e-86	FFCP PHASE2:Mm9::chr19:31038353..31038362,+	p@chr19:31038353..31038362, +
1.87e-86	FFCP PHASE1:Mm9::chr8:23117055..23117056,-	p@chr8:23117055..23117056, -
1.87e-86	FFCP PHASE2:Mm9::chr12:115979100..115979103,-	p@chr12:115979100..115979103, -
1.87e-86	FFCP PHASE1:Mm9::chr19:31038353..31038362,+	p@chr19:31038353..31038362, +
1.87e-86	FFCP PHASE2:Mm9::chr17:59564142..59564144,+	p@chr17:59564142..59564144, +
1.23e-66	FFCP PHASE1:Hg19::chr12:52478546..52478552,+	p@chr12:52478546..52478552, +
1.23e-66	FFCP PHASE2:Hg19::chr1:157567826..157567835,-	p2@FCRL4
1.23e-66	FFCP PHASE2:Hg19::chr12:52478546..52478552,+	p@chr12:52478546..52478552, +
1.23e-66	FFCP PHASE1:Hg19::chr1:157567826..157567835,-	p2@FCRL4
2.39e-66	FFCP PHASE2:Hg19::chr19:36640447..36640459,+	p@chr19:36640447..36640459, +
2.39e-66	FFCP PHASE1:Hg19::chr20:62321640..62321645,+	p1@BC131817
2.39e-66	FFCP PHASE1:Hg19::chr11:1265985..1265990,+	p@chr11:1265985..1265990, +
2.39e-66	FFCP PHASE1:Hg19::chr20:31612754..31612763,+	p@chr20:31612754..31612763, +
2.39e-66	FFCP PHASE2:Hg19::chr11:1265985..1265990,+	p@chr11:1265985..1265990, +
2.39e-66	FFCP PHASE1:Hg19::chr19:36640447..36640459,+	p@chr19:36640447..36640459, +
2.39e-66	FFCP PHASE2:Hg19::chr14:103560509..103560517,+	p@chr14:103560509..103560517, +
2.39e-66	FFCP PHASE2:Hg19::chr20:62321640..62321645,+	p1@BC131817
2.39e-66	FFCP PHASE2:Hg19::chr13:107026326..107026335,-	p@chr13:107026326..107026335, -
2.39e-66	FFCP PHASE2:Hg19::chr20:31612754..31612763,+	p@chr20:31612754..31612763, +
2.39e-66	FFCP PHASE1:Hg19::chr14:103560509..103560517,+	p@chr14:103560509..103560517, +
2.39e-66	FFCP PHASE1:Hg19::chr13:107026326..107026335,-	p@chr13:107026326..107026335, -
4.66e-66	FFCP PHASE2:Hg19::chr18:29006845..29006854,-	p@chr18:29006845..29006854, -
4.66e-66	FFCP PHASE1:Hg19::chr18:49921251..49921263,+	p@chr18:49921251..49921263, +
4.66e-66	FFCP PHASE2:Hg19::chr3:187957664..187957675,+	p58@LPP
4.66e-66	FFCP PHASE1:Hg19::chr3:124535316..124535340,+	p@chr3:124535316..124535340, +
4.66e-66	FFCP PHASE1:Hg19::chr12:53673418..53673427,+	p9@ESPL1
4.66e-66	FFCP PHASE2:Hg19::chr11:1283367..1283377,+	p@chr11:1283367..1283377, +
4.66e-66	FFCP PHASE1:Hg19::chr3:187957646..187957656,+	p43@LPP
4.66e-66	FFCP PHASE2:Hg19::chr19:51530837..51530842,-	p10@KLK11
4.66e-66	FFCP PHASE2:Hg19::chr16:69418649..69418659,-	p@chr16:69418649..69418659, -
4.66e-66	FFCP PHASE1:Hg19::chr18:29006845..29006854,-	p@chr18:29006845..29006854, -
4.66e-66	FFCP PHASE2:Hg19::chr6:30954084..30954093,-	p@chr6:30954084..30954093, -
4.66e-66	FFCP PHASE1:Hg19::chr3:187957664..187957675,+	p58@LPP
4.66e-66	FFCP PHASE1:Hg19::chr1:152382640..152382645,+	p@chr1:152382640..152382645, +
4.66e-66	FFCP PHASE2:Hg19::chr18:49921251..49921263,+	p@chr18:49921251..49921263, +
4.66e-66	FFCP PHASE2:Hg19::chr12:53673418..53673427,+	p9@ESPL1
4.66e-66	FFCP PHASE2:Hg19::chr3:124535316..124535340,+	p@chr3:124535316..124535340, +
4.66e-66	FFCP PHASE1:Hg19::chr16:69418649..69418659,-	p@chr16:69418649..69418659, -
4.66e-66	FFCP PHASE1:Hg19::chr19:51530837..51530842,-	p10@KLK11

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=lymphoid tissue
-|namespace=
+|namespace=FANTOM
 |obo_creation_date=
 |part_of=UBERON:0002193;;UBERON:0002465

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UBERON:0001744: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:20, 12 September 2014

Ontology Tree: Loaded from BioPortal

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