UBERON:0002259: Difference between revisions
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|located_in= | |located_in= | ||
|name=corpora quadrigemina | |name=corpora quadrigemina | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002314 | |part_of=UBERON:0002314 | ||
Latest revision as of 17:28, 12 September 2014
| Name: | corpora quadrigemina | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculi遯ｶ譚ｯwo inferior, two superior遯ｶ鄂ｵocated on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina] | ||
| Xrefs: |
| ||
| Synonyms: |
"colliculi" EXACT [MP:0000899] "corpora quadrigemina" EXACT [] | ||
| Comments: | editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates | ||
| Alt_id: | UBERON:FMA_77488-MA_0002567 | ||
| Subset: | uberon_slim |
Gray709.png]
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0006777(tectal plate) |
| part_of: | UBERON:0002314(midbrain tectum) |
Children
| derives from: | FF:0011283 (mouse corpora quadrigemina- adult sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 16-22A4 (corpora quadrigemina, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002259 (corpora quadrigemina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.47e-44 | FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_4f66a25ab4b9c8a3e56a63115f532e2f | p@chr1:158200818..158200829, - |
| 7.47e-44 | FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_4f66a25ab4b9c8a3e56a63115f532e2f | p@chr1:158200818..158200829, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_fc13cfd0051d495b3cb9f69c4e59f637 | p@chr15:22719411..22719436, + |
| 2.87e-30 | FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_fc13cfd0051d495b3cb9f69c4e59f637 | p19@Rgs8 |
| 2.87e-30 | FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_fc13cfd0051d495b3cb9f69c4e59f637 | p19@Rgs8 |
| 2.87e-30 | FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_fc13cfd0051d495b3cb9f69c4e59f637 | p@chr15:22719411..22719436, + |
| 3.06e-23 | FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_af33490429517d2a4ede973b0f1ca86c | p@chr2:127098489..127098493, - |
| 3.06e-23 | FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_af33490429517d2a4ede973b0f1ca86c | p@chr2:127098489..127098493, - |
| 5.07e-23 | FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_2e541c074f8fba0f0af0533bee292901 | p@chr16:96721083..96721092, + |
| 5.07e-23 | FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_2e541c074f8fba0f0af0533bee292901 | p@chr2:158208771..158208772, + |
| 5.07e-23 | FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_2e541c074f8fba0f0af0533bee292901 | p@chr2:158208771..158208772, + |
| 5.07e-23 | FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_2e541c074f8fba0f0af0533bee292901 | p@chr16:96721083..96721092, + |
| 8.39e-23 | FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_f098ad130b3483122c233223a214d4bd | p1@ENSMUST00000157206 |
| 8.39e-23 | FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_f098ad130b3483122c233223a214d4bd | p1@ENSMUST00000157206 |
| 1.39e-22 | FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_2c98164c39da37ae96a9b8bea7e059c5 | p7@Adipor2 |
| 1.39e-22 | FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_2c98164c39da37ae96a9b8bea7e059c5 | p7@Adipor2 |
| 5.15e-19 | FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_2e5ab203f70ee1712266788efb974373 | p@chr14:52528327..52528336, - |
| 5.15e-19 | FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_2e5ab203f70ee1712266788efb974373 | p@chr14:52528327..52528336, - |
| 7.74e-19 | FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_d4a9e01159b3cafef70795c9fe04325e | p@chr19:32177340..32177351, - |
| 7.74e-19 | FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_d4a9e01159b3cafef70795c9fe04325e | p@chr19:32177340..32177351, - |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_664f3af9816e3a6b439650491f34a9f9 | p@chr4:83035887..83035924, - |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_664f3af9816e3a6b439650491f34a9f9 | p@chr4:98216369..98216408, + |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_664f3af9816e3a6b439650491f34a9f9 | p@chr4:98216369..98216408, + |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_664f3af9816e3a6b439650491f34a9f9 | p@chr4:83035887..83035924, - |
| 1.74e-18 | FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_c338b11d42c19a5e5e529d53316e4b1b | p@chr8:123151369..123151375, + |
| 1.74e-18 | FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_c338b11d42c19a5e5e529d53316e4b1b | p@chr8:123151369..123151375, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_4f2a6fa49044ae5a10f55ad9e0055251 | p3@Prmt7 |
| 2.59e-18 | FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_4f2a6fa49044ae5a10f55ad9e0055251 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_4f2a6fa49044ae5a10f55ad9e0055251 | p3@Prmt7 |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_4f2a6fa49044ae5a10f55ad9e0055251 | p@chr8:108091532..108091548, - |
| 2.59e-18 | FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_4f2a6fa49044ae5a10f55ad9e0055251 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_4f2a6fa49044ae5a10f55ad9e0055251 | p@chr8:108091532..108091548, - |
| 6.79e-16 | FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_7521b287103091f4cd832ba073febc85 | p@chr1:101686777..101686780, + |
| 6.79e-16 | FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_7521b287103091f4cd832ba073febc85 | p@chr1:101686777..101686780, + |
| 9.51e-16 | FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_45d32020d6107ddcec31c83eec391469 | p6@Ptprr |
| 9.51e-16 | FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_45d32020d6107ddcec31c83eec391469 | p6@Ptprr |
| 9.51e-16 | FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_45d32020d6107ddcec31c83eec391469 | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_45d32020d6107ddcec31c83eec391469 | p@chr17:69476739..69476749, + |
| 9.51e-16 | FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_45d32020d6107ddcec31c83eec391469 | p3@Ninj2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_45d32020d6107ddcec31c83eec391469 | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_45d32020d6107ddcec31c83eec391469 | p3@Ninj2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_45d32020d6107ddcec31c83eec391469 | p@chr17:69476739..69476749, + |
| 1.33e-15 | FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_c1fcb807b7a1de6c9461cc1bcc378dfd | p19@Gas7 |
| 1.33e-15 | FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_c1fcb807b7a1de6c9461cc1bcc378dfd | p19@Gas7 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_493404f34d9c69cc4085466598a9ebbb | p1@uc007ovb.1 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_493404f34d9c69cc4085466598a9ebbb | p@chr10:111706834..111706844, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_493404f34d9c69cc4085466598a9ebbb | p1@uc007ovb.1 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_493404f34d9c69cc4085466598a9ebbb | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_493404f34d9c69cc4085466598a9ebbb | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_493404f34d9c69cc4085466598a9ebbb | p@chr11:55886412..55886420, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_493404f34d9c69cc4085466598a9ebbb | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_493404f34d9c69cc4085466598a9ebbb | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_493404f34d9c69cc4085466598a9ebbb | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_493404f34d9c69cc4085466598a9ebbb | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_493404f34d9c69cc4085466598a9ebbb | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_493404f34d9c69cc4085466598a9ebbb | p@chr11:55886412..55886420, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_493404f34d9c69cc4085466598a9ebbb | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_493404f34d9c69cc4085466598a9ebbb | p@chr10:111706834..111706844, + |
| 3.62e-14 | FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_0753ade2f30e33e439272a95736a8973 | p@chr16:96720848..96720858, + |
| 3.62e-14 | FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_0753ade2f30e33e439272a95736a8973 | p63@Tcf7l2 |
| 3.62e-14 | FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_0753ade2f30e33e439272a95736a8973 | p63@Tcf7l2 |
| 3.62e-14 | FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_0753ade2f30e33e439272a95736a8973 | p@chr16:96720848..96720858, + |
| 4.85e-14 | FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_8d2797e372e519cd9c1ed398d298b4bf | p@chr14:93478934..93478944, - |
| 4.85e-14 | FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_8d2797e372e519cd9c1ed398d298b4bf | p@chr14:93478934..93478944, - |
| 6.5e-14 | FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_b6dcf5f4e82f6daad8472558a5698e9a | p2@Ghrh |
| 6.5e-14 | FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_b6dcf5f4e82f6daad8472558a5698e9a | p2@Ghrh |
| 8.69e-14 | FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p7@Fam169a |
| 8.69e-14 | FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p@chr10:19891807..19891818, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p8@St18 |
| 8.69e-14 | FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p8@St18 |
| 8.69e-14 | FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p@chr2:31133553..31133564, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p@chr10:19891807..19891818, + |
| 8.69e-14 | FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p7@Fam169a |
| 8.69e-14 | FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_03f0b79e705db5e1ff1a5dfdf14efa41 | p@chr2:31133553..31133564, + |
| 1.16e-13 | FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_e5e8f8d110fca60b8ae2425c4ff16115 | p@chr2:163149068..163149077, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_e5e8f8d110fca60b8ae2425c4ff16115 | p9@Oprm1 |
| 1.16e-13 | FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_e5e8f8d110fca60b8ae2425c4ff16115 | p9@Oprm1 |
| 1.16e-13 | FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_e5e8f8d110fca60b8ae2425c4ff16115 | p@chr9:103085667..103085678, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_e5e8f8d110fca60b8ae2425c4ff16115 | p@chr9:103085667..103085678, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_e5e8f8d110fca60b8ae2425c4ff16115 | p@chr2:163149068..163149077, + |
| 1.55e-13 | FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_0ef77c9299f5eeef5ffdc2442d5d8c31 | p6@Skp1a |
| 1.55e-13 | FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_0ef77c9299f5eeef5ffdc2442d5d8c31 | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_0ef77c9299f5eeef5ffdc2442d5d8c31 | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_0ef77c9299f5eeef5ffdc2442d5d8c31 | p6@Skp1a |
| 2.06e-13 | FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_8b347e86ebf85fe30ae7a96d4e8967d2 | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_8b347e86ebf85fe30ae7a96d4e8967d2 | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_8b347e86ebf85fe30ae7a96d4e8967d2 | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_8b347e86ebf85fe30ae7a96d4e8967d2 | p@chr4:43519210..43519232, + |
| 2.06e-13 | FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_8b347e86ebf85fe30ae7a96d4e8967d2 | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_8b347e86ebf85fe30ae7a96d4e8967d2 | p@chr10:31110259..31110265, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_8b347e86ebf85fe30ae7a96d4e8967d2 | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_8b347e86ebf85fe30ae7a96d4e8967d2 | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_8b347e86ebf85fe30ae7a96d4e8967d2 | p@chr10:31110259..31110265, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_8b347e86ebf85fe30ae7a96d4e8967d2 | p@chr4:43519210..43519232, + |
| 1.2e-12 | FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_e92abbc64fe459ecf92248a7adfa8a81 | p3@Rgs17 |
| 1.2e-12 | FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_e92abbc64fe459ecf92248a7adfa8a81 | p3@Rgs17 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_555e96262d4116037facc076f02ec3dc | p14@Fbxo7 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_555e96262d4116037facc076f02ec3dc | p14@Fbxo7 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_555e96262d4116037facc076f02ec3dc | p1@ENSMUST00000124586 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_555e96262d4116037facc076f02ec3dc | p1@ENSMUST00000124586 |
