UBERON:0002358: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=peritoneum | |name=peritoneum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003697 | |part_of=UBERON:0003697 | ||
Latest revision as of 17:29, 12 September 2014
| Name: | peritoneum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A serous membrane that forms the lining of the abdominal cavity or the coelom 遯ｶ� it covers most of the intra-abdominal (or coelomic) organs 遯ｶ� in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]. The smooth transparent serous membrane that lines the cavity of the abdomen of a mammal and is folded inward over the abdominal and pelvic viscera[BTO]. The endothelial lining of the ABDOMINAL CAVITY. The parietal peritoneum covers the inside of the ABDOMINAL WALL and the visceral peritoneum covers the bowel, the MESENTERY, and certain of the organs. The portion that covers the bowel becomes the serosal layer of the bowel wall[GAID]." [Wikipedia:Peritoneum, ZFIN:curator] | ||
| Xrefs: |
| ||
| Comments: | TODO - in ZFA is_a epithelium | ||
| Alt_id: | UBERON:FMA_9584-XAO_0000139-ZFA_0005120 | ||
| Subset: |
uberon_slim vertebrate_core |
Gray1040.png]
200px-Gray1040.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000042(serous membrane) |
|---|---|
| develops_from: | UBERON:0000926(mesoderm) |
| part_of: | UBERON:0003697(abdominal wall) |
Children
| part of: | UBERON:0001178 (visceral peritoneum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10276-104E6
- 10304-104H7
- 10332-105B8
- 11329-117E6 (Preadipocyte - omental, donor2)
- 11403-118D8 (Preadipocyte - omental, donor3)
- 11468-119C1 (Preadipocyte - omental, donor1)
- 11473-119C6 (Adipocyte - omental, donor1)
- 11474-119C7 (Adipocyte - omental, donor2)
- 11475-119C8 (Adipocyte - omental, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002358 (peritoneum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.41e-163 | FFCP PHASE1:Hg19::chr18:20122740..20122747,+#_b2f22ebb4448cafdeb11da6d21b2ac58 | p@chr18:20122740..20122747, + |
| 5.41e-163 | FFCP PHASE2:Hg19::chr18:20122740..20122747,+#_b2f22ebb4448cafdeb11da6d21b2ac58 | p@chr18:20122740..20122747, + |
| 1.44e-101 | FFCP PHASE2:Hg19::chr15:39087815..39087824,-#_b7a12ecda1f6249a81142e290f1511e9 | p@chr15:39087815..39087824, - |
| 1.44e-101 | FFCP PHASE1:Hg19::chr15:39087815..39087824,-#_b7a12ecda1f6249a81142e290f1511e9 | p@chr15:39087815..39087824, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:73484112..73484119,+#_0ef96eb36b6de65411ba41adbe592450 | p43@ELN |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:73484112..73484119,+#_0ef96eb36b6de65411ba41adbe592450 | p43@ELN |
| 8.19e-75 | FFCP PHASE1:Hg19::chr15:81225699..81225710,+#_0df4fd8aac2ba65886de4b9115078d50 | p26@KIAA1199 |
| 8.19e-75 | FFCP PHASE2:Hg19::chr4:112437251..112437278,+#_0df4fd8aac2ba65886de4b9115078d50 | p@chr4:112437251..112437278, + |
| 8.19e-75 | FFCP PHASE2:Hg19::chr15:81225699..81225710,+#_0df4fd8aac2ba65886de4b9115078d50 | p26@KIAA1199 |
| 8.19e-75 | FFCP PHASE1:Hg19::chr4:112437251..112437278,+#_0df4fd8aac2ba65886de4b9115078d50 | p@chr4:112437251..112437278, + |
| 1.92e-69 | FFCP PHASE1:Hg19::chr10:105428550..105428555,-#_f4a61f5b16350ade0b49c3ab50c180f6 | p25@SH3PXD2A |
| 1.92e-69 | FFCP PHASE2:Hg19::chr10:105428550..105428555,-#_f4a61f5b16350ade0b49c3ab50c180f6 | p25@SH3PXD2A |
| 1.46e-68 | FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_d1b2661a41b5e16f4d74080160aefead | p19@KIAA1199 |
| 1.46e-68 | FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_d1b2661a41b5e16f4d74080160aefead | p19@KIAA1199 |
| 2.94e-68 | FFCP PHASE1:Hg19::chr15:26342114..26342124,+#_b245e1979ea81db84c1c7c1e8705b3cd | p@chr15:26342114..26342124, + |
| 2.94e-68 | FFCP PHASE2:Hg19::chr15:26342114..26342124,+#_b245e1979ea81db84c1c7c1e8705b3cd | p@chr15:26342114..26342124, + |
| 1.47e-66 | FFCP PHASE2:Hg19::chr7:40251315..40251325,-#_1528fb400cf34ae4232345b24a21fda9 | p@chr7:40251315..40251325, - |
| 1.47e-66 | FFCP PHASE1:Hg19::chr7:40251315..40251325,-#_1528fb400cf34ae4232345b24a21fda9 | p@chr7:40251315..40251325, - |
| 5.13e-66 | FFCP PHASE2:Hg19::chr6:30811934..30811939,-#_e737f8e21f5156a08e3598e38f2e0b12 | p@chr6:30811934..30811939, - |
| 5.13e-66 | FFCP PHASE1:Hg19::chr6:30811934..30811939,-#_e737f8e21f5156a08e3598e38f2e0b12 | p@chr6:30811934..30811939, - |
| 1.95e-63 | FFCP PHASE2:Hg19::chr19:18718144..18718158,+#_b56d2605958632d2ec4b5878f7ef38fb | p@chr19:18718144..18718158, + |
| 1.95e-63 | FFCP PHASE1:Hg19::chr19:18718144..18718158,+#_b56d2605958632d2ec4b5878f7ef38fb | p@chr19:18718144..18718158, + |
| 2.22e-63 | FFCP PHASE2:Hg19::chr14:23072291..23072333,+#_ae07ed67bf685e1b885003af76f776df | p@chr14:23072291..23072333, + |
| 2.22e-63 | FFCP PHASE1:Hg19::chr14:23072291..23072333,+#_ae07ed67bf685e1b885003af76f776df | p@chr14:23072291..23072333, + |
| 6.07e-62 | FFCP PHASE2:Hg19::chr19:18900805..18900820,-#_c67d43a8ade2618e03dd661331dd7df7 | p@chr19:18900805..18900820, - |
| 6.07e-62 | FFCP PHASE1:Hg19::chr19:18900805..18900820,-#_c67d43a8ade2618e03dd661331dd7df7 | p@chr19:18900805..18900820, - |
| 6.79e-60 | FFCP PHASE2:Hg19::chr12:8814772..8814786,-#_9a729563cc004bfd8a47f462ec12fefa | p13@MFAP5 |
| 6.79e-60 | FFCP PHASE1:Hg19::chr12:8814772..8814786,-#_9a729563cc004bfd8a47f462ec12fefa | p13@MFAP5 |
| 1.49e-59 | FFCP PHASE2:Hg19::chr12:15035058..15035069,+#_6bfff11f73e9a57ec6ceedad75ee4aaa | p@chr12:15035058..15035069, + |
| 1.49e-59 | FFCP PHASE1:Hg19::chr12:15035058..15035069,+#_6bfff11f73e9a57ec6ceedad75ee4aaa | p@chr12:15035058..15035069, + |
| 1.84e-59 | FFCP PHASE1:Hg19::chr9:93101022..93101028,+#_3a0f9eb506d102bb392c29b870981f65 | p@chr9:93101022..93101028, + |
| 1.84e-59 | FFCP PHASE2:Hg19::chr9:93101022..93101028,+#_3a0f9eb506d102bb392c29b870981f65 | p@chr9:93101022..93101028, + |
| 2.98e-59 | FFCP PHASE1:Hg19::chr2:191745264..191745275,+#_88608e489dff81a8a5d5106581b94c67 | p21@GLS |
| 2.98e-59 | FFCP PHASE2:Hg19::chr2:191745264..191745275,+#_88608e489dff81a8a5d5106581b94c67 | p21@GLS |
| 1.01e-58 | FFCP PHASE2:Hg19::chr4:112437339..112437350,+#_7a7a3249c6936e2182172c66cd86263e | p@chr4:112437339..112437350, + |
| 1.01e-58 | FFCP PHASE1:Hg19::chr4:112437339..112437350,+#_7a7a3249c6936e2182172c66cd86263e | p@chr4:112437339..112437350, + |
| 1.11e-58 | FFCP PHASE2:Hg19::chr9:103340443..103340454,+#_47bd33e12bdd72994a139eb8b33dd648 | p4@MURC |
| 1.11e-58 | FFCP PHASE1:Hg19::chr9:103340443..103340454,+#_47bd33e12bdd72994a139eb8b33dd648 | p4@MURC |
| 2.09e-58 | FFCP PHASE1:Hg19::chr19:18900031..18900054,+#_784cb506c2744d05665e1857d602abf1 | p@chr19:18900031..18900054, + |
| 2.09e-58 | FFCP PHASE2:Hg19::chr19:18900031..18900054,+#_784cb506c2744d05665e1857d602abf1 | p@chr19:18900031..18900054, + |
| 2.12e-58 | FFCP PHASE2:Hg19::chr8:80414650..80414654,+#_988d6f8ad2d8a831e78d8f9c81c8d4b7 | p@chr8:80414650..80414654, + |
| 2.12e-58 | FFCP PHASE1:Hg19::chr8:80414650..80414654,+#_988d6f8ad2d8a831e78d8f9c81c8d4b7 | p@chr8:80414650..80414654, + |
| 4.66e-58 | FFCP PHASE2:Hg19::chr19:18896512..18896527,-#_66c62cb55e269d0ee2ef5db7cadcfb47 | p@chr19:18896512..18896527, - |
| 4.66e-58 | FFCP PHASE1:Hg19::chr19:18896512..18896527,-#_66c62cb55e269d0ee2ef5db7cadcfb47 | p@chr19:18896512..18896527, - |
| 1.4e-55 | FFCP PHASE1:Hg19::chr19:18896642..18896656,-#_552fb1a02c03d9d2fd9cef461cf47861 | p@chr19:18896642..18896656, - |
| 1.4e-55 | FFCP PHASE2:Hg19::chr19:18896642..18896656,-#_552fb1a02c03d9d2fd9cef461cf47861 | p@chr19:18896642..18896656, - |
| 7.68e-54 | FFCP PHASE2:Hg19::chr19:18900836..18900848,-#_d87aecb3e1f2026d8a2d1fe1abe2ad5d | p@chr19:18900836..18900848, - |
| 7.68e-54 | FFCP PHASE1:Hg19::chr19:18900836..18900848,-#_d87aecb3e1f2026d8a2d1fe1abe2ad5d | p@chr19:18900836..18900848, - |
| 6.91e-53 | FFCP PHASE2:Hg19::chr11:103720186..103720199,-#_07d3f24a46e67e2371b234762daf33e1 | p@chr11:103720186..103720199, - |
| 6.91e-53 | FFCP PHASE1:Hg19::chr11:103720186..103720199,-#_07d3f24a46e67e2371b234762daf33e1 | p@chr11:103720186..103720199, - |
| 9.03e-53 | FFCP PHASE2:Hg19::chr6:169622388..169622400,-#_5efe5a218baa09676fc069e078d08753 | p@chr6:169622388..169622400, - |
| 9.03e-53 | FFCP PHASE1:Hg19::chr6:169622388..169622400,-#_5efe5a218baa09676fc069e078d08753 | p@chr6:169622388..169622400, - |
| 5.4e-52 | FFCP PHASE1:Hg19::chr10:105428632..105428639,-#_6e00d38a9a707f7ab3cd1e75e017014c | p26@SH3PXD2A |
| 5.4e-52 | FFCP PHASE2:Hg19::chr10:105428632..105428639,-#_6e00d38a9a707f7ab3cd1e75e017014c | p26@SH3PXD2A |
| 7.41e-52 | FFCP PHASE1:Hg19::chr15:81214436..81214445,+#_de6571d57459b68eabab3e44d4ae5cab | p13@KIAA1199 |
| 7.41e-52 | FFCP PHASE2:Hg19::chr15:81214436..81214445,+#_de6571d57459b68eabab3e44d4ae5cab | p13@KIAA1199 |
| 2.22e-51 | FFCP PHASE2:Hg19::chr6:75831042..75831053,-#_f7a9219e5b153755d81d134778879b55 | p@chr6:75831042..75831053, - |
| 2.22e-51 | FFCP PHASE1:Hg19::chr6:75831042..75831053,-#_f7a9219e5b153755d81d134778879b55 | p@chr6:75831042..75831053, - |
| 3.75e-51 | FFCP PHASE1:Hg19::chr19:18893717..18893745,+#_0930fa6510d2e3313cf3b364ff68af7e | p@chr19:18893717..18893745, + |
| 3.75e-51 | FFCP PHASE2:Hg19::chr19:18893717..18893745,+#_0930fa6510d2e3313cf3b364ff68af7e | p@chr19:18893717..18893745, + |
| 4.87e-51 | FFCP PHASE2:Hg19::chr19:18896862..18896874,-#_ab62241c6fbbce66ae2f694bebd21c25 | p@chr19:18896862..18896874, - |
| 4.87e-51 | FFCP PHASE1:Hg19::chr19:18896862..18896874,-#_ab62241c6fbbce66ae2f694bebd21c25 | p@chr19:18896862..18896874, - |
| 6.9e-51 | FFCP PHASE1:Hg19::chr19:18897375..18897390,-#_ab5a2d5bc481d79fc4a41bb51a3e6f3b | p4@COMP |
| 6.9e-51 | FFCP PHASE2:Hg19::chr19:18897375..18897390,-#_ab5a2d5bc481d79fc4a41bb51a3e6f3b | p4@COMP |
| 1.05e-49 | FFCP PHASE2:Hg19::chr5:150138790..150138796,-#_6c74f52880ad32bf1c5ba772628338fa | p18@DCTN4 |
| 1.05e-49 | FFCP PHASE1:Hg19::chr5:150138790..150138796,-#_6c74f52880ad32bf1c5ba772628338fa | p18@DCTN4 |
| 1.24e-49 | FFCP PHASE1:Hg19::chr15:83330983..83330997,-#_3b71b178ff0e8964f550f13534af356a | p10@AP3B2 |
| 1.24e-49 | FFCP PHASE2:Hg19::chr15:83330983..83330997,-#_3b71b178ff0e8964f550f13534af356a | p10@AP3B2 |
| 1.73e-49 | FFCP PHASE1:Hg19::chr11:111896671..111896691,+#_d38a197d3cae561a9fb6aafc3b9a16c2 | p@chr11:111896671..111896691, + |
| 1.73e-49 | FFCP PHASE2:Hg19::chr11:111896671..111896691,+#_d38a197d3cae561a9fb6aafc3b9a16c2 | p@chr11:111896671..111896691, + |
| 2.39e-49 | FFCP PHASE2:Hg19::chr12:8814756..8814767,-#_e104de6b9004f7ed711f0933a6067b4b | p19@MFAP5 |
| 2.39e-49 | FFCP PHASE1:Hg19::chr12:8814756..8814767,-#_e104de6b9004f7ed711f0933a6067b4b | p19@MFAP5 |
| 4.72e-49 | FFCP PHASE2:Hg19::chr19:18899276..18899289,-#_cc51511de7656267bd1edfb7338b7f39 | p@chr19:18899276..18899289, - |
| 4.72e-49 | FFCP PHASE1:Hg19::chr19:18899276..18899289,-#_cc51511de7656267bd1edfb7338b7f39 | p@chr19:18899276..18899289, - |
| 6.44e-49 | FFCP PHASE1:Hg19::chr13:102104738..102104747,+#_de7e9fc2c821702631aec61370759919 | p11@ITGBL1 |
| 6.44e-49 | FFCP PHASE2:Hg19::chr13:102104738..102104747,+#_de7e9fc2c821702631aec61370759919 | p11@ITGBL1 |
| 1.14e-48 | FFCP PHASE2:Hg19::chr4:88928893..88928902,+#_be5708f533b4abd605ed04de2c3d8e7e | p4@PKD2 |
| 1.14e-48 | FFCP PHASE1:Hg19::chr4:88928893..88928902,+#_be5708f533b4abd605ed04de2c3d8e7e | p4@PKD2 |
| 1.58e-48 | FFCP PHASE2:Hg19::chr6:75843119..75843139,-#_7a9ee9e4d79ae74749888a3a33fbbb4a | p@chr6:75843119..75843139, - |
| 1.58e-48 | FFCP PHASE1:Hg19::chr6:75843119..75843139,-#_7a9ee9e4d79ae74749888a3a33fbbb4a | p@chr6:75843119..75843139, - |
| 1.77e-48 | FFCP PHASE1:Hg19::chr8:74464406..74464424,-#_5e4293ab01d185a960343b83050e2893 | p4@STAU2 |
| 1.77e-48 | FFCP PHASE2:Hg19::chr8:74464406..74464424,-#_5e4293ab01d185a960343b83050e2893 | p4@STAU2 |
| 1.99e-48 | FFCP PHASE2:Hg19::chr19:18893611..18893635,-#_9f40fc26bfb4b115e459a631e2b3a8d2 | p1@AK094919 |
| 1.99e-48 | FFCP PHASE1:Hg19::chr19:18893611..18893635,-#_9f40fc26bfb4b115e459a631e2b3a8d2 | p1@AK094919 |
| 2.25e-48 | FFCP PHASE2:Hg19::chr7:73484184..73484197,+#_ad5ec64d3c69784f7824a74ba74b5edf | p19@ELN |
| 2.25e-48 | FFCP PHASE1:Hg19::chr7:73484184..73484197,+#_ad5ec64d3c69784f7824a74ba74b5edf | p19@ELN |
| 2.83e-48 | FFCP PHASE1:Hg19::chr3:141719209..141719215,-#_500e7939262ca4e81d36cc4308997e8f | p10@TFDP2 |
| 2.83e-48 | FFCP PHASE2:Hg19::chr3:141719209..141719215,-#_500e7939262ca4e81d36cc4308997e8f | p10@TFDP2 |
| 5.81e-48 | FFCP PHASE2:Hg19::chr3:112321809..112321819,-#_5ed764696039c570af727298b1c29c5f | p@chr3:112321809..112321819, - |
| 5.81e-48 | FFCP PHASE1:Hg19::chr3:112321809..112321819,-#_5ed764696039c570af727298b1c29c5f | p@chr3:112321809..112321819, - |
| 3.73e-47 | FFCP PHASE1:Hg19::chr19:18896798..18896823,-#_8ebe1d740ca3b3efa7cf80ca9d3a5660 | p@chr19:18896798..18896823, - |
| 3.73e-47 | FFCP PHASE2:Hg19::chr19:18896798..18896823,-#_8ebe1d740ca3b3efa7cf80ca9d3a5660 | p@chr19:18896798..18896823, - |
| 4.75e-47 | FFCP PHASE2:Hg19::chr19:18898324..18898353,+#_f60bfaa2ad4bc1841730466bc131ca74 | p@chr19:18898324..18898353, + |
| 4.75e-47 | FFCP PHASE1:Hg19::chr19:18898324..18898353,+#_f60bfaa2ad4bc1841730466bc131ca74 | p@chr19:18898324..18898353, + |
| 7.35e-47 | FFCP PHASE1:Hg19::chr19:38812519..38812533,-#_bb91c66c5013ef505d2468c182db5c82 | p@chr19:38812519..38812533, - |
| 7.35e-47 | FFCP PHASE2:Hg19::chr19:38812519..38812533,-#_bb91c66c5013ef505d2468c182db5c82 | p@chr19:38812519..38812533, - |
| 2.79e-46 | FFCP PHASE2:Hg19::chr7:37947092..37947121,+#_e886aa7bf4512ef6db708bdab3cb7d6e | p2@CU691333 |
| 2.79e-46 | FFCP PHASE1:Hg19::chr7:37947092..37947121,+#_e886aa7bf4512ef6db708bdab3cb7d6e | p2@CU691333 |
| 3.81e-46 | FFCP PHASE1:Hg19::chr19:18900850..18900868,-#_0dda3c603f6ad0907aa0826d5a5c1be6 | p@chr19:18900850..18900868, - |
| 3.81e-46 | FFCP PHASE2:Hg19::chr19:18900850..18900868,-#_0dda3c603f6ad0907aa0826d5a5c1be6 | p@chr19:18900850..18900868, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "An epithelium that lines the peritoneal cavity.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Serous membrane that forms the lining of the abdominal cavity or the coelom. It covers most of the intra-abdominal organs, supports the abdominal organs, and serves as a conduit for their blood and lymph vessels and nerves. It is composed of a layer of mesothelium.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
