UBERON:0003064: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=intermediate mesoderm | |name=intermediate mesoderm | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0000926;;UBERON:0005256 | |part_of=UBERON:0000922;;UBERON:0000926;;UBERON:0005256 | ||
Latest revision as of 17:36, 12 September 2014
| Name: | intermediate mesoderm | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm] | ||
| Xrefs: |
| ||
| Synonyms: |
"IM" RELATED [] "intermediate mesenchyme" RELATED [UBERONREF:0000002] "intermediate plate mesoderm" RELATED [UBERON:cjm] "mesenchyma intermedium" RELATED LATIN [Wikipedia:Intermediate_mesoderm] | ||
| Comments: | note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). | ||
| Alt_id: | UBERON:XAO_0000085-ZFA_0001206 | ||
| Subset: |
uberon_slim vertebrate_core |
Gray19_with_color.png]
200px-Gray19_with_color.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0000926(mesoderm) |
| part_of: | UBERON:0000922(embryo),UBERON:0000926(mesoderm),UBERON:0005256(trunk mesenchyme) |
Children
| develops from: | UBERON:0000163 (embryonic cloaca),UBERON:0000164 (primitive urogenital sinus),UBERON:0003060 (pronephric duct),UBERON:0003890 (Mullerian duct),UBERON:0004122 (genitourinary system),UBERON:0004876 (urogenital ridge),UBERON:0005805 (dorsal aorta),UBERON:0006858 (adrenal/interrenal gland) |
|---|---|
| part of: | UBERON:0005721 (pronephric mesoderm) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003064 (intermediate mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.89e-56 | FFCP PHASE2:Mm9::chr8:71601351..71601362,-#_bd3d7a223e423ec854f597dc4aba3358 | p4@Slc18a1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr8:71601351..71601362,-#_bd3d7a223e423ec854f597dc4aba3358 | p4@Slc18a1 |
| 1.21e-49 | FFCP PHASE1:Mm9::chr19:21249374..21249395,-#_fee510994530c4c356683b7f7dad9f12 | p@chr19:21249374..21249395, - |
| 1.21e-49 | FFCP PHASE2:Mm9::chr15:97654117..97654137,-#_fee510994530c4c356683b7f7dad9f12 | p@chr15:97654117..97654137, - |
| 1.21e-49 | FFCP PHASE2:Mm9::chr19:21249374..21249395,-#_fee510994530c4c356683b7f7dad9f12 | p@chr19:21249374..21249395, - |
| 1.21e-49 | FFCP PHASE1:Mm9::chr15:97654117..97654137,-#_fee510994530c4c356683b7f7dad9f12 | p@chr15:97654117..97654137, - |
| 3.05e-44 | FFCP PHASE2:Mm9::chr15:97654090..97654102,-#_6fa02b44903adf5bf3e8364d417cbc7c | p@chr15:97654090..97654102, - |
| 3.05e-44 | FFCP PHASE1:Mm9::chr15:97654090..97654102,-#_6fa02b44903adf5bf3e8364d417cbc7c | p@chr15:97654090..97654102, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr15:74673026..74673039,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:74673026..74673039, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr17:34859353..34859366,-#_834de3ad2929da3eafdbe3bfab2891ae | p1@ENSMUST00000172970 |
| 1.38e-43 | FFCP PHASE1:Mm9::chr17:34941459..34941482,-#_834de3ad2929da3eafdbe3bfab2891ae | p2@Cyp21a1 |
| 1.38e-43 | FFCP PHASE1:Mm9::chr16:35652352..35652356,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr16:35652352..35652356, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr15:74663969..74663988,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:74663969..74663988, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr8:26923446..26923458,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr8:26923446..26923458, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr2:27036499..27036503,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr2:27036499..27036503, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr2:27036499..27036503,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr2:27036499..27036503, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr15:74664966..74664981,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:74664966..74664981, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr18:76324790..76324803,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr18:76324790..76324803, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr17:34859353..34859366,-#_834de3ad2929da3eafdbe3bfab2891ae | p1@ENSMUST00000172970 |
| 1.38e-43 | FFCP PHASE2:Mm9::chr16:35652352..35652356,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr16:35652352..35652356, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr15:74663969..74663988,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:74663969..74663988, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr11:100377686..100377694,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr11:100377686..100377694, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr18:68588917..68588922,-#_834de3ad2929da3eafdbe3bfab2891ae | p3@Mc2r |
| 1.38e-43 | FFCP PHASE1:Mm9::chr1:73951774..73951810,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr1:73951774..73951810, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr17:34938706..34938718,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr17:34938706..34938718, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr15:74664966..74664981,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:74664966..74664981, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr6:34362117..34362128,+#_834de3ad2929da3eafdbe3bfab2891ae | p3@Akr1b7 |
| 1.38e-43 | FFCP PHASE2:Mm9::chr5:4038983..4039001,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr5:4038983..4039001, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr17:34941276..34941288,-#_834de3ad2929da3eafdbe3bfab2891ae | p4@Cyp21a1 |
| 1.38e-43 | FFCP PHASE1:Mm9::chr7:29103899..29103915,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr7:29103899..29103915, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr4:137275600..137275640,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr4:137275600..137275640, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr8:26923560..26923571,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr8:26923560..26923571, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr13:54672381..54672430,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr13:54672381..54672430, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr18:68588917..68588922,-#_834de3ad2929da3eafdbe3bfab2891ae | p3@Mc2r |
| 1.38e-43 | FFCP PHASE1:Mm9::chr17:34941276..34941288,-#_834de3ad2929da3eafdbe3bfab2891ae | p4@Cyp21a1 |
| 1.38e-43 | FFCP PHASE1:Mm9::chr17:34938706..34938718,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr17:34938706..34938718, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr8:26923560..26923571,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr8:26923560..26923571, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr17:34941009..34941023,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr17:34941009..34941023, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr6:34362117..34362128,+#_834de3ad2929da3eafdbe3bfab2891ae | p3@Akr1b7 |
| 1.38e-43 | FFCP PHASE2:Mm9::chr11:100377686..100377694,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr11:100377686..100377694, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr7:29103899..29103915,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr7:29103899..29103915, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr8:26923446..26923458,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr8:26923446..26923458, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr4:137275600..137275640,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr4:137275600..137275640, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr18:76324790..76324803,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr18:76324790..76324803, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr2:27026049..27026066,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr2:27026049..27026066, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr17:34941459..34941482,-#_834de3ad2929da3eafdbe3bfab2891ae | p2@Cyp21a1 |
| 1.38e-43 | FFCP PHASE2:Mm9::chr13:54672381..54672430,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr13:54672381..54672430, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr2:27026049..27026066,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr2:27026049..27026066, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr17:34941009..34941023,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr17:34941009..34941023, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr15:74673026..74673039,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:74673026..74673039, - |
| 1.38e-43 | FFCP PHASE2:Mm9::chr15:78832682..78832693,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:78832682..78832693, + |
| 1.38e-43 | FFCP PHASE1:Mm9::chr15:78832682..78832693,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr15:78832682..78832693, + |
| 1.38e-43 | FFCP PHASE2:Mm9::chr1:73951774..73951810,-#_834de3ad2929da3eafdbe3bfab2891ae | p@chr1:73951774..73951810, - |
| 1.38e-43 | FFCP PHASE1:Mm9::chr5:4038983..4039001,+#_834de3ad2929da3eafdbe3bfab2891ae | p@chr5:4038983..4039001, + |
| 7.24e-40 | FFCP PHASE1:Mm9::chr8:95484471..95484483,+#_3b4cbfa0c978dfd9dfb479f946f310a3 | p3@Slc6a2 |
| 7.24e-40 | FFCP PHASE2:Mm9::chr8:95484471..95484483,+#_3b4cbfa0c978dfd9dfb479f946f310a3 | p3@Slc6a2 |
| 2.72e-38 | FFCP PHASE1:Mm9::chr6:34362190..34362202,+#_bbafc63349b554953dd5b75a1b815ca5 | p2@Akr1b7 |
| 2.72e-38 | FFCP PHASE2:Mm9::chr15:74665115..74665134,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr15:74665115..74665134, - |
| 2.72e-38 | FFCP PHASE1:Mm9::chr5:30925848..30925858,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr5:30925848..30925858, - |
| 2.72e-38 | FFCP PHASE1:Mm9::chr17:80011121..80011128,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr17:80011121..80011128, + |
| 2.72e-38 | FFCP PHASE1:Mm9::chr15:74665115..74665134,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr15:74665115..74665134, - |
| 2.72e-38 | FFCP PHASE2:Mm9::chr15:74707074..74707077,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr15:74707074..74707077, + |
| 2.72e-38 | FFCP PHASE2:Mm9::chr17:50634715..50634724,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr17:50634715..50634724, - |
| 2.72e-38 | FFCP PHASE2:Mm9::chr17:34941491..34941513,-#_bbafc63349b554953dd5b75a1b815ca5 | p1@Cyp21a1 |
| 2.72e-38 | FFCP PHASE1:Mm9::chr8:26923838..26923851,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr8:26923838..26923851, + |
| 2.72e-38 | FFCP PHASE1:Mm9::chr17:34941491..34941513,-#_bbafc63349b554953dd5b75a1b815ca5 | p1@Cyp21a1 |
| 2.72e-38 | FFCP PHASE2:Mm9::chr5:30925848..30925858,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr5:30925848..30925858, - |
| 2.72e-38 | FFCP PHASE2:Mm9::chr17:80011121..80011128,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr17:80011121..80011128, + |
| 2.72e-38 | FFCP PHASE2:Mm9::chr18:68588934..68588947,-#_bbafc63349b554953dd5b75a1b815ca5 | p2@Mc2r |
| 2.72e-38 | FFCP PHASE2:Mm9::chr6:34362190..34362202,+#_bbafc63349b554953dd5b75a1b815ca5 | p2@Akr1b7 |
| 2.72e-38 | FFCP PHASE1:Mm9::chr17:34866927..34866961,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr17:34866927..34866961, - |
| 2.72e-38 | FFCP PHASE1:Mm9::chr2:27021163..27021203,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr2:27021163..27021203, + |
| 2.72e-38 | FFCP PHASE2:Mm9::chr2:27021163..27021203,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr2:27021163..27021203, + |
| 2.72e-38 | FFCP PHASE1:Mm9::chr17:50634715..50634724,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr17:50634715..50634724, - |
| 2.72e-38 | FFCP PHASE2:Mm9::chr8:26923635..26923652,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr8:26923635..26923652, - |
| 2.72e-38 | FFCP PHASE1:Mm9::chr18:68588934..68588947,-#_bbafc63349b554953dd5b75a1b815ca5 | p2@Mc2r |
| 2.72e-38 | FFCP PHASE1:Mm9::chr15:74707074..74707077,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr15:74707074..74707077, + |
| 2.72e-38 | FFCP PHASE2:Mm9::chr15:74665091..74665105,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr15:74665091..74665105, - |
| 2.72e-38 | FFCP PHASE1:Mm9::chr15:74665091..74665105,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr15:74665091..74665105, - |
| 2.72e-38 | FFCP PHASE2:Mm9::chr17:34866927..34866961,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr17:34866927..34866961, - |
| 2.72e-38 | FFCP PHASE2:Mm9::chr8:26923838..26923851,+#_bbafc63349b554953dd5b75a1b815ca5 | p@chr8:26923838..26923851, + |
| 2.72e-38 | FFCP PHASE1:Mm9::chr8:26923635..26923652,-#_bbafc63349b554953dd5b75a1b815ca5 | p@chr8:26923635..26923652, - |
| 3.09e-38 | FFCP PHASE1:Mm9::chr6:34373028..34373046,+#_ed861ca71923963109eeed44053e9b20 | p@chr6:34373028..34373046, + |
| 3.09e-38 | FFCP PHASE2:Mm9::chr1:153900342..153900361,-#_ed861ca71923963109eeed44053e9b20 | p@chr1:153900342..153900361, - |
| 3.09e-38 | FFCP PHASE1:Mm9::chr5:21407397..21407419,+#_ed861ca71923963109eeed44053e9b20 | p@chr5:21407397..21407419, + |
| 3.09e-38 | FFCP PHASE1:Mm9::chr1:153900342..153900361,-#_ed861ca71923963109eeed44053e9b20 | p@chr1:153900342..153900361, - |
| 3.09e-38 | FFCP PHASE2:Mm9::chr5:21407397..21407419,+#_ed861ca71923963109eeed44053e9b20 | p@chr5:21407397..21407419, + |
| 3.09e-38 | FFCP PHASE2:Mm9::chr6:34373028..34373046,+#_ed861ca71923963109eeed44053e9b20 | p@chr6:34373028..34373046, + |
| 3.5e-38 | FFCP PHASE2:Mm9::chr3:79629387..79629400,-#_9cd0fe7d7a9124ba1b930c8c03a8f27b | p@chr3:79629387..79629400, - |
| 3.5e-38 | FFCP PHASE1:Mm9::chr3:79629387..79629400,-#_9cd0fe7d7a9124ba1b930c8c03a8f27b | p@chr3:79629387..79629400, - |
| 3.98e-38 | FFCP PHASE1:Mm9::chr1:73951957..73951972,-#_de092cbec04dd8c944c3fd0f10edd91f | p@chr1:73951957..73951972, - |
| 3.98e-38 | FFCP PHASE2:Mm9::chr1:73951957..73951972,-#_de092cbec04dd8c944c3fd0f10edd91f | p@chr1:73951957..73951972, - |
| 4.52e-38 | FFCP PHASE2:Mm9::chr3:98686156..98686162,-#_3f407bbe4b6a5916c41d0b56f6facfcf | p@chr3:98686156..98686162, - |
| 4.52e-38 | FFCP PHASE1:Mm9::chr3:98657253..98657270,-#_3f407bbe4b6a5916c41d0b56f6facfcf | p@chr3:98657253..98657270, - |
| 4.52e-38 | FFCP PHASE2:Mm9::chr3:98657253..98657270,-#_3f407bbe4b6a5916c41d0b56f6facfcf | p@chr3:98657253..98657270, - |
| 4.52e-38 | FFCP PHASE1:Mm9::chr3:98686156..98686162,-#_3f407bbe4b6a5916c41d0b56f6facfcf | p@chr3:98686156..98686162, - |
| 5.13e-38 | FFCP PHASE2:Mm9::chr17:34947621..34947655,-#_a2c7122ddc515ea9a1d39c1cee95f1bf | p@chr17:34947621..34947655, - |
| 5.13e-38 | FFCP PHASE1:Mm9::chr17:34947621..34947655,-#_a2c7122ddc515ea9a1d39c1cee95f1bf | p@chr17:34947621..34947655, - |
| 1.49e-37 | FFCP PHASE1:Mm9::chr19:21249362..21249373,-#_7894afb5d9cdc1483eddb23a8d7f387f | p@chr19:21249362..21249373, - |
| 1.49e-37 | FFCP PHASE1:Mm9::chr15:74664157..74664168,-#_7894afb5d9cdc1483eddb23a8d7f387f | p@chr15:74664157..74664168, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Mesoderm between somite and lateral plate. Traditionally thought to give rise to the urogenital system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
