UBERON:0003134: Difference between revisions

Latest revision as of 17:38, 12 September 2014

Name:

female reproductive organ

Namespace:

FANTOM

Definition:

"A female organ involved in reproduction" [UBERON:xp]

Xrefs:

Expandlinks:

Synonyms:

"female organism reproductive organ" EXACT [OBOL:automatic]
"female organism reproductive structure" EXACT [OBOL:automatic]
"female organism reproductive system organ" EXACT [OBOL:automatic]
"female organism sex organ" EXACT [OBOL:automatic]
"female reproductive system organ" EXACT []
"female sex organ" EXACT []
"reproductive organ of female organism" EXACT [OBOL:automatic]
"reproductive structure of female organism" EXACT [OBOL:automatic]
"reproductive system organ of female organism" EXACT [OBOL:automatic]
"sex organ of female organism" EXACT [OBOL:automatic]

Subset:

organ_slim

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0003133(reproductive organ),UBERON:0014404(female anatomical structure)
part_of:	UBERON:0003100(female organism),UBERON:0000474(female reproductive system),UBERON:0003100(female organism)

Children

is a:	UBERON:0000992 (female gonad),UBERON:0003975 (internal female genitalia),UBERON:0005056 (external female genitalia),FF:10689-109F5 (mixed mullerian tumor cell line:HTMMT)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10013-101C4 (cervix, adult, pool1)
10020-101D2 (ovary, adult, pool1)
10100-102D1 (uterus, adult, pool1)
10204-103F6 (vagina, adult)
10426-106D3 (epidermoid carcinoma cell line:A431)
10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
10497-107C2 (endometrial carcinoma cell line:OMC-2)
10530-107F8
10552-107I3 (cervical cancer cell line:D98-AH2)

... further results Mouse (Mus musculus)

10013-101C4 (cervix, adult, pool1)
10020-101D2 (ovary, adult, pool1)
10100-102D1 (uterus, adult, pool1)
10204-103F6 (vagina, adult)
10426-106D3 (epidermoid carcinoma cell line:A431)
10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
10448-106F7 (endometrial stromal sarcoma cell line:OMC-9)
10497-107C2 (endometrial carcinoma cell line:OMC-2)
10530-107F8
10552-107I3 (cervical cancer cell line:D98-AH2)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003134 (female reproductive organ), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
1.9e-58	FFCP PHASE2:Mm9::chr10:5636678..5636725,-	p6@Esr1
1.9e-58	FFCP PHASE1:Mm9::chr10:5636678..5636725,-	p6@Esr1
8.07e-56	FFCP PHASE1:Mm9::chr3:79594253..79594277,-	p@chr3:79594253..79594277, -
8.07e-56	FFCP PHASE2:Mm9::chr3:79594253..79594277,-	p@chr3:79594253..79594277, -
1.3e-48	FFCP PHASE1:Mm9::chr9:8900409..8900425,+	p2@Pgr
1.3e-48	FFCP PHASE2:Mm9::chr9:8900409..8900425,+	p2@Pgr
8.46e-44	FFCP PHASE1:Mm9::chr9:8900490..8900502,+	p4@Pgr
8.46e-44	FFCP PHASE2:Mm9::chr9:8900490..8900502,+	p4@Pgr
7.35e-42	FFCP PHASE1:Mm9::chr10:5636336..5636347,-	p9@Esr1
7.35e-42	FFCP PHASE2:Mm9::chr10:5636336..5636347,-	p9@Esr1
3.04e-39	FFCP PHASE1:Mm9::chr9:8900563..8900574,+	p5@Pgr
3.04e-39	FFCP PHASE2:Mm9::chr9:8900563..8900574,+	p5@Pgr
5.22e-39	FFCP PHASE2:Mm9::chr14:41844272..41844285,-	p@chr14:41844272..41844285, -
5.22e-39	FFCP PHASE2:Mm9::chr7:96675672..96675683,-	p6@Prss23
5.22e-39	FFCP PHASE1:Mm9::chr7:96675672..96675683,-	p6@Prss23
5.22e-39	FFCP PHASE1:Mm9::chr14:41844272..41844285,-	p@chr14:41844272..41844285, -
2.54e-36	FFCP PHASE1:Mm9::chr9:8899828..8899855,+	p3@Pgr
2.54e-36	FFCP PHASE2:Mm9::chr9:8899828..8899855,+	p3@Pgr
1.94e-35	FFCP PHASE2:Mm9::chr9:8752254..8752260,-	p@chr9:8752254..8752260, -
1.94e-35	FFCP PHASE1:Mm9::chr9:8752254..8752260,-	p@chr9:8752254..8752260, -
1.68e-34	FFCP PHASE1:Mm9::chr9:98857712..98857715,-	p@chr9:98857712..98857715, -
1.68e-34	FFCP PHASE2:Mm9::chr9:98857712..98857715,-	p@chr9:98857712..98857715, -
1.96e-34	FFCP PHASE2:Mm9::chr4:35105498..35105509,-	p@chr4:35105498..35105509, -
1.96e-34	FFCP PHASE1:Mm9::chr4:35105498..35105509,-	p@chr4:35105498..35105509, -
2.3e-34	FFCP PHASE1:Mm9::chr10:5634855..5634866,-	p@chr10:5634855..5634866, -
2.3e-34	FFCP PHASE2:Mm9::chr10:5634855..5634866,-	p@chr10:5634855..5634866, -
1.53e-33	FFCP PHASE2:Mm9::chr9:8900459..8900489,+	p1@Pgr
1.53e-33	FFCP PHASE1:Mm9::chr9:8900459..8900489,+	p1@Pgr
2.45e-33	FFCP PHASE2:Mm9::chr5:112905373..112905419,+	p@chr5:112905373..112905419, +
2.45e-33	FFCP PHASE2:Mm9::chr2:166407469..166407519,-	p4@Prex1
2.45e-33	FFCP PHASE2:Mm9::chr13:20203373..20203384,+	p22@Elmo1
2.45e-33	FFCP PHASE1:Mm9::chr14:56857569..56857584,-	p@chr14:56857569..56857584, -
2.45e-33	FFCP PHASE2:Mm9::chr7:129057811..129057817,+	p@chr7:129057811..129057817, +
2.45e-33	FFCP PHASE1:Mm9::chr6:97777247..97777258,+	p@chr6:97777247..97777258, +
2.45e-33	FFCP PHASE1:Mm9::chr2:131681357..131681366,-	p@chr2:131681357..131681366, -
2.45e-33	FFCP PHASE1:Mm9::chr7:150952861..150952867,-	p4@Mrgprg
2.45e-33	FFCP PHASE2:Mm9::chr14:14765101..14765107,+	p1@ENSMUST00000159275, p1@uc007sgd.1
2.45e-33	FFCP PHASE2:Mm9::chr6:121306916..121306921,+	p12@Slc6a12
2.45e-33	FFCP PHASE1:Mm9::chr9:40297346..40297350,-	p@chr9:40297346..40297350, -
2.45e-33	FFCP PHASE1:Mm9::chr4:140462693..140462700,-	p@chr4:140462693..140462700, -
2.45e-33	FFCP PHASE2:Mm9::chr13:61036161..61036172,-	p@chr13:61036161..61036172, -
2.45e-33	FFCP PHASE1:Mm9::chr2:131685562..131685563,-	p2@Erv3
2.45e-33	FFCP PHASE2:Mm9::chr11:46564064..46564079,+	p2@Havcr1
2.45e-33	FFCP PHASE2:Mm9::chr2:131680870..131680891,-	p@chr2:131680870..131680891, -
2.45e-33	FFCP PHASE1:Mm9::chr5:112905373..112905419,+	p@chr5:112905373..112905419, +
2.45e-33	FFCP PHASE2:Mm9::chrX:140752342..140752344,+	p6@Alg13
2.45e-33	FFCP PHASE2:Mm9::chr16:20316875..20316878,-	p@chr16:20316875..20316878, -
2.45e-33	FFCP PHASE1:Mm9::chr16:92596391..92596400,-	p@chr16:92596391..92596400, -
2.45e-33	FFCP PHASE2:Mm9::chr2:169512387..169512392,-	p@chr2:169512387..169512392, -
2.45e-33	FFCP PHASE1:Mm9::chr6:121306890..121306895,+	p11@Slc6a12
2.45e-33	FFCP PHASE1:Mm9::chr10:21130385..21130393,-	p@chr10:21130385..21130393, -
2.45e-33	FFCP PHASE2:Mm9::chr6:97777247..97777258,+	p@chr6:97777247..97777258, +
2.45e-33	FFCP PHASE2:Mm9::chr9:40297262..40297271,-	p@chr9:40297262..40297271, -
2.45e-33	FFCP PHASE1:Mm9::chr2:131681543..131681554,-	p@chr2:131681543..131681554, -
2.45e-33	FFCP PHASE2:Mm9::chrX:51027816..51027821,+	p2@4930502E18Rik
2.45e-33	FFCP PHASE1:Mm9::chr7:150952890..150952901,-	p2@Mrgprg
2.45e-33	FFCP PHASE1:Mm9::chr2:169512387..169512392,-	p@chr2:169512387..169512392, -
2.45e-33	FFCP PHASE2:Mm9::chr13:61036176..61036186,-	p@chr13:61036176..61036186, -
2.45e-33	FFCP PHASE1:Mm9::chr13:27434787..27434799,-	p@chr13:27434787..27434799, -
2.45e-33	FFCP PHASE2:Mm9::chr2:131681104..131681114,+	p@chr2:131681104..131681114, +
2.45e-33	FFCP PHASE1:Mm9::chr10:115614018..115614024,-	p@chr10:115614018..115614024, -
2.45e-33	FFCP PHASE1:Mm9::chr17:29601992..29602002,+	p@chr17:29601992..29602002, +
2.45e-33	FFCP PHASE2:Mm9::chr7:150952861..150952867,-	p4@Mrgprg
2.45e-33	FFCP PHASE1:Mm9::chr2:124475078..124475084,+	p@chr2:124475078..124475084, +
2.45e-33	FFCP PHASE2:Mm9::chr14:56857569..56857584,-	p@chr14:56857569..56857584, -
2.45e-33	FFCP PHASE2:Mm9::chr6:121306890..121306895,+	p11@Slc6a12
2.45e-33	FFCP PHASE1:Mm9::chr7:129057811..129057817,+	p@chr7:129057811..129057817, +
2.45e-33	FFCP PHASE1:Mm9::chrX:140752342..140752344,+	p6@Alg13
2.45e-33	FFCP PHASE1:Mm9::chr9:40297262..40297271,-	p@chr9:40297262..40297271, -
2.45e-33	FFCP PHASE2:Mm9::chr13:27437553..27437554,+	p3@Prl8a2
2.45e-33	FFCP PHASE2:Mm9::chr9:40297312..40297323,-	p@chr9:40297312..40297323, -
2.45e-33	FFCP PHASE2:Mm9::chr12:8339007..8339020,+	p@chr12:8339007..8339020, +
2.45e-33	FFCP PHASE1:Mm9::chr7:150952911..150952917,-	p3@Mrgprg
2.45e-33	FFCP PHASE1:Mm9::chr6:48854959..48854972,+	p6@Abp1
2.45e-33	FFCP PHASE1:Mm9::chr13:61036161..61036172,-	p@chr13:61036161..61036172, -
2.45e-33	FFCP PHASE1:Mm9::chr11:46564064..46564079,+	p2@Havcr1
2.45e-33	FFCP PHASE1:Mm9::chr12:8339007..8339020,+	p@chr12:8339007..8339020, +
2.45e-33	FFCP PHASE2:Mm9::chr13:27434787..27434799,-	p@chr13:27434787..27434799, -
2.45e-33	FFCP PHASE1:Mm9::chr10:115614273..115614299,+	p17@Ptprr
2.45e-33	FFCP PHASE1:Mm9::chrX:51027816..51027821,+	p2@4930502E18Rik
2.45e-33	FFCP PHASE1:Mm9::chr16:20316875..20316878,-	p@chr16:20316875..20316878, -
2.45e-33	FFCP PHASE2:Mm9::chr7:150952890..150952901,-	p2@Mrgprg
2.45e-33	FFCP PHASE2:Mm9::chr2:124475078..124475084,+	p@chr2:124475078..124475084, +
2.45e-33	FFCP PHASE1:Mm9::chr2:166407469..166407519,-	p4@Prex1
2.45e-33	FFCP PHASE2:Mm9::chr10:115614018..115614024,-	p@chr10:115614018..115614024, -
2.45e-33	FFCP PHASE1:Mm9::chr6:121306916..121306921,+	p12@Slc6a12
2.45e-33	FFCP PHASE2:Mm9::chr2:131681357..131681366,-	p@chr2:131681357..131681366, -
2.45e-33	FFCP PHASE1:Mm9::chr9:40297312..40297323,-	p@chr9:40297312..40297323, -
2.45e-33	FFCP PHASE2:Mm9::chr9:40297334..40297345,-	p@chr9:40297334..40297345, -
2.45e-33	FFCP PHASE2:Mm9::chr16:92596391..92596400,-	p@chr16:92596391..92596400, -
2.45e-33	FFCP PHASE2:Mm9::chr12:8339024..8339034,+	p@chr12:8339024..8339034, +
2.45e-33	FFCP PHASE1:Mm9::chr2:131680870..131680891,-	p@chr2:131680870..131680891, -
2.45e-33	FFCP PHASE2:Mm9::chr5:112904886..112904895,-	p6@Sez6l
2.45e-33	FFCP PHASE2:Mm9::chr4:140462693..140462700,-	p@chr4:140462693..140462700, -
2.45e-33	FFCP PHASE1:Mm9::chr13:61036176..61036186,-	p@chr13:61036176..61036186, -
2.45e-33	FFCP PHASE2:Mm9::chr6:48855132..48855142,+	p11@Abp1
2.45e-33	FFCP PHASE2:Mm9::chr17:29601992..29602002,+	p@chr17:29601992..29602002, +
2.45e-33	FFCP PHASE2:Mm9::chr2:131685562..131685563,-	p2@Erv3
2.45e-33	FFCP PHASE1:Mm9::chr13:27437553..27437554,+	p3@Prl8a2
2.45e-33	FFCP PHASE2:Mm9::chr10:21130385..21130393,-	p@chr10:21130385..21130393, -

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=female reproductive organ
-|namespace=
+|namespace=FANTOM
 |obo_creation_date=
 |part_of=UBERON:0003100;;UBERON:0000474;;UBERON:0003100

Personal tools

UBERON:0003134: Difference between revisions - resource_browser

Search

Human

Mouse

Rat

Dog

Chicken

Macaque

Cross species

Other

Tools

UBERON:0003134: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:38, 12 September 2014

Ontology Tree: Loaded from BioPortal

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0