Personal tools

UBERON:0003608: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=hindlimb long bone
|name=hindlimb long bone
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002103
|part_of=UBERON:0002103

Latest revision as of 17:40, 12 September 2014

Name:hindlimb long bone
Namespace:FANTOM
Definition:"A long bone that is part of a hindlimb [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000300
Synonyms: "hind limb long bone" EXACT [OBOL:automatic]
"inferior member long bone" EXACT [OBOL:automatic]
"long bone of hind limb" EXACT [OBOL:automatic]
"long bone of hindlimb" EXACT [OBOL:automatic]
"long bone of inferior member" EXACT [OBOL:automatic]
"long bone of lower extremity" EXACT [OBOL:automatic]
"lower extremity long bone" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003464(hindlimb bone),UBERON:0003606(limb long bone)
part_of:UBERON:0002103(hindlimb)



Children

is a:UBERON:0000981 (femur)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003608 (hindlimb long bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data