UBERON:0004117: Difference between revisions
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|located_in= | |located_in= | ||
|name=pharyngeal pouch | |name=pharyngeal pouch | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0008814 | |part_of=UBERON:0000922;;UBERON:0008814 | ||
Latest revision as of 17:43, 12 September 2014
| Name: | pharyngeal pouch | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "embryonic structure that forms on the endodermal side between the pharyngeal arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. The pouches line up with the clefts, and these thin segments become gills in fish[WP]. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]." [Wikipedia:Pharyngeal_pouch_(embryology)] | ||
| Xrefs: |
| ||
| Synonyms: |
"branchial pouch" EXACT [Wikipedia:Branchial_pouch] "visceral pouch" EXACT SENSU [] | ||
| Comments: | Editor notes: consider adding location (precursor) - i.e. internal (endodermal) // The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003258(endoderm of foregut),UBERON:0004814(upper respiratory tract epithelium),UBERON:0005291(embryonic tissue) |
|---|---|
| develops_from: | UBERON:0007690(early pharyngeal endoderm) |
| part_of: | UBERON:0000922(embryo),UBERON:0008814(pharyngeal arch system) |
Children
| is a: | UBERON:0007123 (pharyngeal pouch 2) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004117 (pharyngeal pouch), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.76e-118 | FFCP PHASE2:Hg19::chr8:11333461..11333472,-#_e540cd819c08d64773a2b60af8f41fee | p@chr8:11333461..11333472, - |
| 7.76e-118 | FFCP PHASE1:Hg19::chr8:11333461..11333472,-#_e540cd819c08d64773a2b60af8f41fee | p@chr8:11333461..11333472, - |
| 6.64e-89 | FFCP PHASE2:Hg19::chr8:11333445..11333459,-#_40491460f5c175c177f48c5a0df6f08e | p@chr8:11333445..11333459, - |
| 6.64e-89 | FFCP PHASE1:Hg19::chr8:11333445..11333459,-#_40491460f5c175c177f48c5a0df6f08e | p@chr8:11333445..11333459, - |
| 3.18e-79 | FFCP PHASE2:Hg19::chr14:36645825..36645840,-#_9d7cda78a5649b6dcd1e05b3b3a32639 | p5@ENST00000556013 |
| 3.18e-79 | FFCP PHASE1:Hg19::chr14:36645825..36645840,-#_9d7cda78a5649b6dcd1e05b3b3a32639 | p5@ENST00000556013 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr7:107301406..107301418,+#_418c7d621035fe6f76942ddbffea874c | p5@SLC26A4 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133883693..133883699,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133883693..133883699, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900606..133900611,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133900606..133900611, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133885307..133885312,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133885307..133885312, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133906121..133906132,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133906121..133906132, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895057..133895065,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133895057..133895065, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134125750..134125765,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:134125750..134125765, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981720..133981727,+#_418c7d621035fe6f76942ddbffea874c | p21@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr9:100616714..100616732,+#_418c7d621035fe6f76942ddbffea874c | p@chr9:100616714..100616732, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133894753..133894756,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133894753..133894756, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1457477..1457487,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1457477..1457487, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134107312..134107315,+#_418c7d621035fe6f76942ddbffea874c | p46@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900431..133900436,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133900431..133900436, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133980132..133980143,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133980132..133980143, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr7:107301406..107301418,+#_418c7d621035fe6f76942ddbffea874c | p5@SLC26A4 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr21:39644214..39644219,+#_418c7d621035fe6f76942ddbffea874c | p21@KCNJ15 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr14:21560489..21560506,-#_418c7d621035fe6f76942ddbffea874c | p@chr14:21560489..21560506, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133885307..133885312,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133885307..133885312, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1417430..1417444,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1417430..1417444, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr14:67998625..67998628,-#_418c7d621035fe6f76942ddbffea874c | p@chr14:67998625..67998628, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133899413..133899418,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133899413..133899418, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr4:88047429..88047437,+#_418c7d621035fe6f76942ddbffea874c | p@chr4:88047429..88047437, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr16:66420861..66420868,+#_418c7d621035fe6f76942ddbffea874c | p@chr16:66420861..66420868, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1457477..1457487,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1457477..1457487, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900431..133900436,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133900431..133900436, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895057..133895065,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133895057..133895065, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133894780..133894789,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133894780..133894789, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr15:64421903..64421920,+#_418c7d621035fe6f76942ddbffea874c | p@chr15:64421903..64421920, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr14:81421428..81421431,+#_418c7d621035fe6f76942ddbffea874c | p11@TSHR |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133980132..133980143,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133980132..133980143, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133882027..133882038,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133882027..133882038, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr21:39644214..39644219,+#_418c7d621035fe6f76942ddbffea874c | p21@KCNJ15 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133961114..133961122,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133961114..133961122, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981730..133981736,+#_418c7d621035fe6f76942ddbffea874c | p38@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1417430..1417444,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1417430..1417444, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134107327..134107332,+#_418c7d621035fe6f76942ddbffea874c | p29@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899413..133899418,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133899413..133899418, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr4:88047429..88047437,+#_418c7d621035fe6f76942ddbffea874c | p@chr4:88047429..88047437, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr16:66420861..66420868,+#_418c7d621035fe6f76942ddbffea874c | p@chr16:66420861..66420868, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:134788853..134788858,-#_418c7d621035fe6f76942ddbffea874c | p@chr2:134788853..134788858, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:36771641..36771644,+#_418c7d621035fe6f76942ddbffea874c | p11@SH3D21 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133953595..133953600,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133953595..133953600, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133899244..133899254,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133899244..133899254, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133882027..133882038,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133882027..133882038, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981730..133981736,+#_418c7d621035fe6f76942ddbffea874c | p38@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133894780..133894789,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133894780..133894789, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1457500..1457511,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1457500..1457511, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134107327..134107332,+#_418c7d621035fe6f76942ddbffea874c | p29@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133961114..133961122,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133961114..133961122, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:134788853..134788858,-#_418c7d621035fe6f76942ddbffea874c | p@chr2:134788853..134788858, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899244..133899254,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133899244..133899254, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:36771641..36771644,+#_418c7d621035fe6f76942ddbffea874c | p11@SH3D21 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133953595..133953600,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133953595..133953600, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895164..133895167,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133895164..133895167, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1457500..1457511,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1457500..1457511, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134145709..134145716,+#_418c7d621035fe6f76942ddbffea874c | p18@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133898957..133898963,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133898957..133898963, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr6:43837226..43837237,-#_418c7d621035fe6f76942ddbffea874c | p@chr6:43837226..43837237, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr18:24321747..24321752,-#_418c7d621035fe6f76942ddbffea874c | p@chr18:24321747..24321752, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900307..133900325,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133900307..133900325, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1426812..1426834,+#_418c7d621035fe6f76942ddbffea874c | p5@TPO |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898734..133898737,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133898734..133898737, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898957..133898963,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133898957..133898963, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134145709..134145716,+#_418c7d621035fe6f76942ddbffea874c | p18@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895164..133895167,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133895164..133895167, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900307..133900325,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133900307..133900325, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1459933..1459941,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1459933..1459941, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr14:81421428..81421431,+#_418c7d621035fe6f76942ddbffea874c | p11@TSHR |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1426812..1426834,+#_418c7d621035fe6f76942ddbffea874c | p5@TPO |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1440068..1440076,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1440068..1440076, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr6:43837226..43837237,-#_418c7d621035fe6f76942ddbffea874c | p@chr6:43837226..43837237, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr18:24321747..24321752,-#_418c7d621035fe6f76942ddbffea874c | p@chr18:24321747..24321752, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981694..133981700,+#_418c7d621035fe6f76942ddbffea874c | p35@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr7:107301447..107301451,+#_418c7d621035fe6f76942ddbffea874c | p23@SLC26A4 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133885414..133885420,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133885414..133885420, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133898734..133898737,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133898734..133898737, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895195..133895206,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133895195..133895206, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:11333494..11333497,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:11333494..11333497, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1459933..1459941,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1459933..1459941, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134145732..134145736,+#_418c7d621035fe6f76942ddbffea874c | p27@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133899004..133899013,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133899004..133899013, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133978809..133978829,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133978809..133978829, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981694..133981700,+#_418c7d621035fe6f76942ddbffea874c | p35@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr7:107301447..107301451,+#_418c7d621035fe6f76942ddbffea874c | p23@SLC26A4 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1440068..1440076,+#_418c7d621035fe6f76942ddbffea874c | p@chr2:1440068..1440076, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898904..133898911,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:133898904..133898911, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900339..133900344,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133900339..133900344, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134108463..134108470,+#_418c7d621035fe6f76942ddbffea874c | p@chr8:134108463..134108470, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133885414..133885420,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133885414..133885420, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1426850..1426859,+#_418c7d621035fe6f76942ddbffea874c | p10@TPO |
| 3.49e-79 | FFCP PHASE2:Hg19::chr7:88388628..88388669,+#_418c7d621035fe6f76942ddbffea874c | p6@ZNF804B |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:11333494..11333497,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:11333494..11333497, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899004..133899013,-#_418c7d621035fe6f76942ddbffea874c | p@chr8:133899004..133899013, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134145732..134145736,+#_418c7d621035fe6f76942ddbffea874c | p27@TG |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. Crump et al, 2004.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
