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UBERON:0005705: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=primary palate mesenchyme
|name=primary palate mesenchyme
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0005620
|part_of=UBERON:0005620

Latest revision as of 17:54, 12 September 2014

Name:primary palate mesenchyme
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0001501
EHDAA:6968
EMAPA:17644
EMAPA:17936

VHOG:0001024

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000078(mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0003323(mesenchyme of upper jaw),UBERON:0006904(head mesenchyme from mesoderm),UBERON:0010258(mesenchyme from rhombencephalic neural crest)
develops_from:UBERON:0009204(medial nasal process mesenchyme),UBERON:0010253(1st arch maxillary mesenchyme from neural crest)
part_of:UBERON:0005620(primary palate)



Children

is a:FF:10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005705 (primary palate mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data