UBERON:0005910

Name:	transitional epithelium
Namespace:	FANTOM
Definition:	"Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium]
Xrefs:	Expandlinks: BTO:0003906 FMA:63914 [ Harnblase_Urothel.png] MESH:A.10.272.850 ncithesaurus:Transitional_Epithelium SCTID:30117005
Synonyms:	"epithelium transitionale" EXACT [FMA:63914] "urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium]
Comments:	see comments for urothelium

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000486(multilaminar epithelium),UBERON:0005911(endo-epithelium)

Children

is a:	UBERON:0000365 (urothelium)
derives from:	FF:0102869 (transitional cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10418-106C4 (transitional-cell carcinoma cell line:5637)
• 10492-107B6 (transitional-cell carcinoma cell line:JMSU1)
• 10565-108A7
• 10587-108D2
• 10707-109H5 (transitional cell carcinoma cell line:Hs 769.T)
• 10751-110D4
• 11216-116B1 (Urothelial cells, donor0)
• 11520-119H8 (Urothelial Cells, donor1)
• 11600-120H7 (Urothelial Cells, donor2)
• 11681-122H7 (Urothelial Cells, donor3)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005910 (transitional epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
2.83e-66	FFCP PHASE1:Hg19::chr21:39627877..39627884,+	p@chr21:39627877..39627884, +
2.83e-66	FFCP PHASE2:Hg19::chr21:39627877..39627884,+	p@chr21:39627877..39627884, +
3.67e-66	FFCP PHASE2:Hg19::chr10:124050511..124050520,+	p9@BTBD16
3.67e-66	FFCP PHASE1:Hg19::chr10:124050511..124050520,+	p9@BTBD16
7.47e-59	FFCP PHASE1:Hg19::chr10:124050568..124050578,+	p6@BTBD16
7.47e-59	FFCP PHASE2:Hg19::chr10:124050568..124050578,+	p6@BTBD16
1.58e-53	FFCP PHASE1:Hg19::chr12:28125967..28125978,-	p16@PTHLH
1.58e-53	FFCP PHASE2:Hg19::chr12:28125967..28125978,-	p16@PTHLH
2.36e-53	FFCP PHASE1:Hg19::chr5:61213179..61213189,-	p@chr5:61213179..61213189, -
2.36e-53	FFCP PHASE2:Hg19::chr5:61213179..61213189,-	p@chr5:61213179..61213189, -
7.51e-50	FFCP PHASE2:Hg19::chrX:102977640..102977644,-	p@chrX:102977640..102977644, -
7.51e-50	FFCP PHASE1:Hg19::chrX:102977640..102977644,-	p@chrX:102977640..102977644, -
8.88e-50	FFCP PHASE2:Hg19::chr9:27524417..27524425,+	p4@IFNK
8.88e-50	FFCP PHASE1:Hg19::chr9:27524417..27524425,+	p4@IFNK
1.77e-48	FFCP PHASE1:Hg19::chr1:40492754..40492762,+	p@chr1:40492754..40492762, +
1.77e-48	FFCP PHASE2:Hg19::chr1:40492754..40492762,+	p@chr1:40492754..40492762, +
1.99e-48	FFCP PHASE1:Hg19::chr10:3954276..3954287,+	p@chr10:3954276..3954287, +
1.99e-48	FFCP PHASE2:Hg19::chr10:3954276..3954287,+	p@chr10:3954276..3954287, +
5.31e-45	FFCP PHASE1:Hg19::chr12:28125953..28125964,-	p17@PTHLH
5.31e-45	FFCP PHASE2:Hg19::chr12:28125953..28125964,-	p17@PTHLH
9.76e-45	FFCP PHASE1:Hg19::chr8:141728731..141728740,-	p38@PTK2
9.76e-45	FFCP PHASE2:Hg19::chr8:141728731..141728740,-	p38@PTK2
3.16e-43	FFCP PHASE1:Hg19::chr5:61213127..61213133,-	p@chr5:61213127..61213133, -
3.16e-43	FFCP PHASE2:Hg19::chr5:61213127..61213133,-	p@chr5:61213127..61213133, -
6.48e-43	FFCP PHASE1:Hg19::chr21:44168074..44168079,+	p@chr21:44168074..44168079, +
6.48e-43	FFCP PHASE2:Hg19::chr21:44168074..44168079,+	p@chr21:44168074..44168079, +
8.63e-43	FFCP PHASE2:Hg19::chr4:125341514..125341526,-	p@chr4:125341514..125341526, -
8.63e-43	FFCP PHASE1:Hg19::chr4:125341514..125341526,-	p@chr4:125341514..125341526, -
3.35e-41	FFCP PHASE1:Hg19::chr10:127763979..127763984,+	p@chr10:127763979..127763984, +
3.35e-41	FFCP PHASE2:Hg19::chr10:127763979..127763984,+	p@chr10:127763979..127763984, +
5.48e-38	FFCP PHASE2:Hg19::chr11:127965855..127965866,+	p@chr11:127965855..127965866, +
5.48e-38	FFCP PHASE1:Hg19::chr11:127965855..127965866,+	p@chr11:127965855..127965866, +
7.3e-38	FFCP PHASE1:Hg19::chr19:15065111..15065171,-	p@chr19:15065111..15065171, -
7.3e-38	FFCP PHASE2:Hg19::chr19:15065111..15065171,-	p@chr19:15065111..15065171, -
2.99e-36	FFCP PHASE2:Hg19::chr10:124050535..124050566,+	p3@BTBD16
2.99e-36	FFCP PHASE1:Hg19::chr10:124050535..124050566,+	p3@BTBD16
8.03e-36	FFCP PHASE1:Hg19::chr6:151358048..151358060,+	p13@MTHFD1L
8.03e-36	FFCP PHASE2:Hg19::chr6:151358048..151358060,+	p13@MTHFD1L
2.14e-35	FFCP PHASE1:Hg19::chr7:2019948..2019961,-	p@chr7:2019948..2019961, -
2.14e-35	FFCP PHASE2:Hg19::chr7:2019948..2019961,-	p@chr7:2019948..2019961, -
4.27e-34	FFCP PHASE2:Hg19::chr15:101282110..101282113,+	p@chr15:101282110..101282113, +
4.27e-34	FFCP PHASE1:Hg19::chr10:5660248..5660254,-	p2@ENST00000427341
4.27e-34	FFCP PHASE1:Hg19::chr15:101282110..101282113,+	p@chr15:101282110..101282113, +
4.27e-34	FFCP PHASE1:Hg19::chr19:6246612..6246613,+	p@chr19:6246612..6246613, +
4.27e-34	FFCP PHASE2:Hg19::chr19:6246612..6246613,+	p@chr19:6246612..6246613, +
4.27e-34	FFCP PHASE2:Hg19::chr10:5660248..5660254,-	p2@ENST00000427341
5.8e-34	FFCP PHASE2:Hg19::chr7:150813498..150813509,+	p30@AGAP3
5.8e-34	FFCP PHASE1:Hg19::chr7:150813498..150813509,+	p30@AGAP3
6.31e-34	FFCP PHASE1:Hg19::chr2:31560793..31560814,-	p@chr2:31560793..31560814, -
6.31e-34	FFCP PHASE2:Hg19::chr2:31560793..31560814,-	p@chr2:31560793..31560814, -
6.72e-34	FFCP PHASE2:Hg19::chr13:20934450..20934456,+	p@chr13:20934450..20934456, +
6.72e-34	FFCP PHASE1:Hg19::chr13:20934450..20934456,+	p@chr13:20934450..20934456, +
8.35e-34	FFCP PHASE2:Hg19::chr14:85935018..85935023,-	p@chr14:85935018..85935023, -
8.35e-34	FFCP PHASE1:Hg19::chr14:85935018..85935023,-	p@chr14:85935018..85935023, -
9.87e-34	FFCP PHASE1:Hg19::chr9:21564382..21564387,-	p@chr9:21564382..21564387, -
9.87e-34	FFCP PHASE2:Hg19::chr9:113802868..113802878,-	p@chr9:113802868..113802878, -
9.87e-34	FFCP PHASE2:Hg19::chr9:21564382..21564387,-	p@chr9:21564382..21564387, -
9.87e-34	FFCP PHASE1:Hg19::chr9:113802868..113802878,-	p@chr9:113802868..113802878, -
1.17e-33	FFCP PHASE1:Hg19::chr19:43965689..43965700,-	p@chr19:43965689..43965700, -
1.17e-33	FFCP PHASE2:Hg19::chr19:43965689..43965700,-	p@chr19:43965689..43965700, -
2.29e-33	FFCP PHASE2:Hg19::chr14:51956090..51956101,+	p32@FRMD6
2.29e-33	FFCP PHASE1:Hg19::chr14:51956090..51956101,+	p32@FRMD6
6.02e-33	FFCP PHASE1:Hg19::chr12:47472684..47472703,-	p12@AMIGO2
6.02e-33	FFCP PHASE2:Hg19::chr12:47472684..47472703,-	p12@AMIGO2
3.76e-32	FFCP PHASE1:Hg19::chr21:45020721..45020728,-	p@chr21:45020721..45020728, -
3.76e-32	FFCP PHASE2:Hg19::chr21:45020721..45020728,-	p@chr21:45020721..45020728, -
5.17e-32	FFCP PHASE1:Hg19::chr8:143814087..143814102,-	p@chr8:143814087..143814102, -
5.17e-32	FFCP PHASE2:Hg19::chr8:143814087..143814102,-	p@chr8:143814087..143814102, -
1.05e-30	FFCP PHASE2:Hg19::chr9:21564331..21564360,-	p@chr9:21564331..21564360, -
1.05e-30	FFCP PHASE1:Hg19::chr9:21564331..21564360,-	p@chr9:21564331..21564360, -
1.69e-30	FFCP PHASE1:Hg19::chr1:183192299..183192310,+	p@chr1:183192299..183192310, +
1.69e-30	FFCP PHASE2:Hg19::chr1:183192299..183192310,+	p@chr1:183192299..183192310, +
1.86e-30	FFCP PHASE1:Hg19::chr2:20402306..20402318,-	p@chr2:20402306..20402318, -
1.86e-30	FFCP PHASE1:Hg19::chr4:125341479..125341498,-	p@chr4:125341479..125341498, -
1.86e-30	FFCP PHASE2:Hg19::chr2:20402306..20402318,-	p@chr2:20402306..20402318, -
1.86e-30	FFCP PHASE2:Hg19::chr4:125341479..125341498,-	p@chr4:125341479..125341498, -
2.52e-30	FFCP PHASE2:Hg19::chr9:27524537..27524559,+	p1@IFNK
2.52e-30	FFCP PHASE1:Hg19::chr9:27524537..27524559,+	p1@IFNK
2.78e-30	FFCP PHASE1:Hg19::chr1:99387558..99387571,-	p@chr1:99387558..99387571, -
2.78e-30	FFCP PHASE2:Hg19::chr13:20805611..20805619,-	p6@GJB6
2.78e-30	FFCP PHASE1:Hg19::chr13:20805611..20805619,-	p6@GJB6
2.78e-30	FFCP PHASE2:Hg19::chr1:99387558..99387571,-	p@chr1:99387558..99387571, -
2.37e-29	FFCP PHASE1:Hg19::chr20:56273255..56273292,-	p@chr20:56273255..56273292, -
2.37e-29	FFCP PHASE2:Hg19::chr20:56273255..56273292,-	p@chr20:56273255..56273292, -
3.69e-29	FFCP PHASE1:Hg19::chr10:124050485..124050505,+	p2@BTBD16
3.69e-29	FFCP PHASE2:Hg19::chr10:124050485..124050505,+	p2@BTBD16
4.92e-28	FFCP PHASE1:Hg19::chr1:183212642..183212654,+	p@chr1:183212642..183212654, +
4.92e-28	FFCP PHASE2:Hg19::chr1:183212642..183212654,+	p@chr1:183212642..183212654, +
7.78e-28	FFCP PHASE2:Hg19::chr6:44096519..44096530,-	p@chr6:44096519..44096530, -
7.78e-28	FFCP PHASE1:Hg19::chr5:149877396..149877405,+	p19@NDST1
7.78e-28	FFCP PHASE2:Hg19::chr5:149877396..149877405,+	p19@NDST1
7.78e-28	FFCP PHASE1:Hg19::chr6:44096519..44096530,-	p@chr6:44096519..44096530, -
1.19e-27	FFCP PHASE1:Hg19::chr13:20762566..20762577,-	p@chr13:20762566..20762577, -
1.19e-27	FFCP PHASE2:Hg19::chr13:20762566..20762577,-	p@chr13:20762566..20762577, -
1.67e-27	FFCP PHASE2:Hg19::chr3:13921498..13921503,-	p6@WNT7A
1.67e-27	FFCP PHASE1:Hg19::chr3:13921498..13921503,-	p6@WNT7A
2.08e-27	FFCP PHASE1:Hg19::chr21:39628993..39628998,+	p25@KCNJ15
2.08e-27	FFCP PHASE2:Hg19::chr21:39628993..39628998,+	p25@KCNJ15
2.34e-27	FFCP PHASE2:Hg19::chr5:146263947..146263959,-	p@chr5:146263947..146263959, -
2.34e-27	FFCP PHASE1:Hg19::chr5:146263947..146263959,-	p@chr5:146263947..146263959, -

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