Personal tools

UBERON:0007846: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 12: Line 12:
|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
|name=dense regular collagenous tissue
|name=dense regular connective tissue
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 18:03, 12 September 2014

Name:dense regular connective tissue
Namespace:FANTOM
Definition:"Regular connective tissue, the intercellular matrix of which consists predominantly of collagen fiber bundles arranged in parallel arrays[FMA]. Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts)[VSAO]" [FMA:64781, VSAO:0000050]
Xrefs:
links:

FMA:64781
ncithesaurus:Regular_Dense_Connective_Tissue
SCTID:22560007
VSAO:0000050

XAO:0004030
Synonyms: "dense fibrous connective tissue" EXACT [FMA:64781]
"dense regular collagenous connective tissue" EXACT [FMA:64781]
"dense regular connective tissue" EXACT [FMA:64781, VSAO:0000050]
"typus regularis (textus connectivus collagenosus compactus)" EXACT [FMA:64781]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0007845(regular connective tissue),UBERON:0011823(dense connective tissue)



Children

is a:UBERON:0000043 (tendon),UBERON:0000211 (ligament)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007846 (dense regular connective tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts).[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.