UBERON:0010363: Difference between revisions

Latest revision as of 18:09, 12 September 2014

endochondral element

Namespace:

FANTOM

Definition:

"A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]

Xrefs:

Expandlinks:

Synonyms:

"endochondral replacement element" EXACT [VSAO:0000139]

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0004765(skeletal element)

Children

is a:	UBERON:0002513 (endochondral bone),UBERON:0015005 (vertebra endochondral element),UBERON:0015061 (limb endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
1350-25C3 (bone (os femoris), neonate N20)
1525-43A6 (bone (os femoris), neonate N16)
1985-43F5 (bone (os femoris), neonate N02)
56-12G2 (bone (os femoris), adult)

Mouse (Mus musculus)

11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
1350-25C3 (bone (os femoris), neonate N20)
1525-43A6 (bone (os femoris), neonate N16)
1985-43F5 (bone (os femoris), neonate N02)
56-12G2 (bone (os femoris), adult)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010363 (endochondral element), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
3.4e-49	FFCP PHASE1:Mm9::chr11:77624716..77624729,+	p26@Myo18a
3.4e-49	FFCP PHASE2:Mm9::chr11:77624716..77624729,+	p26@Myo18a
4.96e-49	FFCP PHASE1:Mm9::chr2:32482372..32482381,+	p@chr2:32482372..32482381, +
4.96e-49	FFCP PHASE2:Mm9::chr8:75097542..75097549,+	p@chr8:75097542..75097549, +
4.96e-49	FFCP PHASE1:Mm9::chr9:21934585..21934591,-	p@chr9:21934585..21934591, -
4.96e-49	FFCP PHASE2:Mm9::chr2:32482372..32482381,+	p@chr2:32482372..32482381, +
4.96e-49	FFCP PHASE2:Mm9::chr9:21934585..21934591,-	p@chr9:21934585..21934591, -
4.96e-49	FFCP PHASE1:Mm9::chr8:75097542..75097549,+	p@chr8:75097542..75097549, +
3.15e-44	FFCP PHASE1:Mm9::chr6:51525810..51525817,+	p@chr6:51525810..51525817, +
3.15e-44	FFCP PHASE2:Mm9::chr6:51525810..51525817,+	p@chr6:51525810..51525817, +
9.78e-40	FFCP PHASE1:Mm9::chr19:4876870..4876880,-	p@chr19:4876870..4876880, -
9.78e-40	FFCP PHASE2:Mm9::chr19:4876870..4876880,-	p@chr19:4876870..4876880, -
1.15e-39	FFCP PHASE2:Mm9::chr1:174140324..174140335,-	p@chr1:174140324..174140335, -
1.15e-39	FFCP PHASE1:Mm9::chr1:174140324..174140335,-	p@chr1:174140324..174140335, -
1.15e-39	FFCP PHASE2:Mm9::chr11:67063327..67063335,+	p@chr11:67063327..67063335, +
1.15e-39	FFCP PHASE1:Mm9::chr16:24096441..24096449,+	p@chr16:24096441..24096449, +
1.15e-39	FFCP PHASE1:Mm9::chr6:4490674..4490679,+	p@chr6:4490674..4490679, +
1.15e-39	FFCP PHASE2:Mm9::chr6:4490674..4490679,+	p@chr6:4490674..4490679, +
1.15e-39	FFCP PHASE1:Mm9::chr11:67063327..67063335,+	p@chr11:67063327..67063335, +
1.15e-39	FFCP PHASE2:Mm9::chr16:24096441..24096449,+	p@chr16:24096441..24096449, +
1.55e-39	FFCP PHASE2:Mm9::chr1:174143249..174143260,-	p@chr1:174143249..174143260, -
1.55e-39	FFCP PHASE1:Mm9::chr1:174143249..174143260,-	p@chr1:174143249..174143260, -
3.03e-39	FFCP PHASE1:Mm9::chr6:51525869..51525891,+	p@chr6:51525869..51525891, +
3.03e-39	FFCP PHASE2:Mm9::chr6:51525869..51525891,+	p@chr6:51525869..51525891, +
9.31e-39	FFCP PHASE2:Mm9::chr11:102130083..102130092,+	p3@Asb16
9.31e-39	FFCP PHASE1:Mm9::chr11:102130083..102130092,+	p3@Asb16
2.41e-35	FFCP PHASE1:Mm9::chr7:133604286..133604297,-	p@chr7:133604286..133604297, -
2.41e-35	FFCP PHASE2:Mm9::chr7:133604286..133604297,-	p@chr7:133604286..133604297, -
2.95e-35	FFCP PHASE2:Mm9::chr4:138365748..138365759,-	p5@Pla2g5
2.95e-35	FFCP PHASE1:Mm9::chr4:138365748..138365759,-	p5@Pla2g5
9.53e-34	FFCP PHASE1:Mm9::chr8:74049600..74049612,-	p2@uc009mdq.1
9.53e-34	FFCP PHASE2:Mm9::chr8:74049600..74049612,-	p2@uc009mdq.1
1.23e-33	FFCP PHASE1:Mm9::chr2:164773241..164773248,+	p3@Mmp9
1.23e-33	FFCP PHASE2:Mm9::chr2:164773241..164773248,+	p3@Mmp9
1.58e-33	FFCP PHASE1:Mm9::chr7:3567707..3567718,-	p2@Oscar
1.58e-33	FFCP PHASE2:Mm9::chr7:3567707..3567718,-	p2@Oscar
1.58e-33	FFCP PHASE2:Mm9::chr1:166815111..166815121,-	p@chr1:166815111..166815121, -
1.58e-33	FFCP PHASE1:Mm9::chr1:166815111..166815121,-	p@chr1:166815111..166815121, -
2.04e-33	FFCP PHASE1:Mm9::chr11:75409652..75409664,+	p@chr11:75409652..75409664, +
2.04e-33	FFCP PHASE2:Mm9::chr11:75409652..75409664,+	p@chr11:75409652..75409664, +
2.04e-33	FFCP PHASE1:Mm9::chr9:70799951..70799962,-	p4@Lipc
2.04e-33	FFCP PHASE2:Mm9::chr9:70799951..70799962,-	p4@Lipc
3.38e-33	FFCP PHASE2:Mm9::chr15:102196702..102196713,-	p6@Sp7
3.38e-33	FFCP PHASE1:Mm9::chr15:102196702..102196713,-	p6@Sp7
7.17e-33	FFCP PHASE1:Mm9::chr8:126415826..126415839,+	p@chr8:126415826..126415839, +
7.17e-33	FFCP PHASE2:Mm9::chr8:126415826..126415839,+	p@chr8:126415826..126415839, +
7.17e-33	FFCP PHASE1:Mm9::chr18:76271498..76271508,+	p@chr18:76271498..76271508, +
7.17e-33	FFCP PHASE2:Mm9::chr18:76271498..76271508,+	p@chr18:76271498..76271508, +
2.67e-30	FFCP PHASE1:Mm9::chr2:32482387..32482399,+	p@chr2:32482387..32482399, +
2.67e-30	FFCP PHASE2:Mm9::chr2:32482387..32482399,+	p@chr2:32482387..32482399, +
1.1e-29	FFCP PHASE2:Mm9::chr12:70396969..70396979,+	p@chr12:70396969..70396979, +
1.1e-29	FFCP PHASE1:Mm9::chr12:70396969..70396979,+	p@chr12:70396969..70396979, +
1.1e-29	FFCP PHASE2:Mm9::chr15:58649683..58649688,-	p@chr15:58649683..58649688, -
1.1e-29	FFCP PHASE1:Mm9::chr15:58649683..58649688,-	p@chr15:58649683..58649688, -
1.46e-29	FFCP PHASE2:Mm9::chr7:133590998..133591009,-	p@chr7:133590998..133591009, -
1.46e-29	FFCP PHASE1:Mm9::chr7:133590998..133591009,-	p@chr7:133590998..133591009, -
1.73e-29	FFCP PHASE2:Mm9::chr18:60751417..60751432,-	p2@Myoz3
1.73e-29	FFCP PHASE1:Mm9::chr18:60751417..60751432,-	p2@Myoz3
2.42e-29	FFCP PHASE2:Mm9::chr11:67051354..67051366,+	p2@Myh4
2.42e-29	FFCP PHASE1:Mm9::chr11:67051354..67051366,+	p2@Myh4
7.46e-29	FFCP PHASE2:Mm9::chr1:57155729..57155740,-	p@chr1:57155729..57155740, -
7.46e-29	FFCP PHASE1:Mm9::chr1:57155729..57155740,-	p@chr1:57155729..57155740, -
9.26e-29	FFCP PHASE2:Mm9::chr11:67056544..67056589,-	p@chr11:67056544..67056589, -
9.26e-29	FFCP PHASE2:Mm9::chr4:43597258..43597265,-	p1@Msmp
9.26e-29	FFCP PHASE1:Mm9::chr11:67056544..67056589,-	p@chr11:67056544..67056589, -
9.26e-29	FFCP PHASE1:Mm9::chr4:43597258..43597265,-	p1@Msmp
1.15e-28	FFCP PHASE2:Mm9::chrY:2858251..2858257,+	p@chrY:2858251..2858257, +
1.15e-28	FFCP PHASE2:Mm9::chr6:90552017..90552024,+	p@chr6:90552017..90552024, +
1.15e-28	FFCP PHASE1:Mm9::chr6:90552017..90552024,+	p@chr6:90552017..90552024, +
1.15e-28	FFCP PHASE1:Mm9::chrY:2858251..2858257,+	p@chrY:2858251..2858257, +
1.43e-28	FFCP PHASE2:Mm9::chr6:34436258..34436292,+	p@chr6:34436258..34436292, +
1.43e-28	FFCP PHASE1:Mm9::chr6:34436258..34436292,+	p@chr6:34436258..34436292, +
2.2e-28	FFCP PHASE2:Mm9::chr11:67069796..67069817,-	p@chr11:67069796..67069817, -
2.2e-28	FFCP PHASE1:Mm9::chr11:67069796..67069817,-	p@chr11:67069796..67069817, -
2.72e-28	FFCP PHASE2:Mm9::chr8:107702369..107702386,+	p@chr8:107702369..107702386, +
2.72e-28	FFCP PHASE1:Mm9::chr8:107702369..107702386,+	p@chr8:107702369..107702386, +
3.45e-28	FFCP PHASE1:Mm9::chr18:78254135..78254146,-	p1@Siglec15
3.45e-28	FFCP PHASE2:Mm9::chr18:78254135..78254146,-	p1@Siglec15
6.5e-28	FFCP PHASE2:Mm9::chr7:133591490..133591500,-	p6@Atp2a1
6.5e-28	FFCP PHASE1:Mm9::chr7:133591490..133591500,-	p6@Atp2a1
8.9e-28	FFCP PHASE1:Mm9::chr7:133591156..133591165,-	p7@Atp2a1
8.9e-28	FFCP PHASE2:Mm9::chr7:133591156..133591165,-	p7@Atp2a1
1.42e-27	FFCP PHASE2:Mm9::chr7:133600635..133600663,+	p@chr7:133600635..133600663, +
1.42e-27	FFCP PHASE1:Mm9::chr7:133600635..133600663,+	p@chr7:133600635..133600663, +
1.42e-27	FFCP PHASE2:Mm9::chr7:133592162..133592188,-	p@chr7:133592162..133592188, -
1.42e-27	FFCP PHASE1:Mm9::chr7:133592162..133592188,-	p@chr7:133592162..133592188, -
6.75e-27	FFCP PHASE2:Mm9::chr11:94837662..94837673,-	p4@Sgca
6.75e-27	FFCP PHASE1:Mm9::chr11:94837662..94837673,-	p4@Sgca
1.66e-26	FFCP PHASE1:Mm9::chr5:104754379..104754387,+	p1@Mepe
1.66e-26	FFCP PHASE2:Mm9::chr5:104754379..104754387,+	p1@Mepe
3.47e-26	FFCP PHASE1:Mm9::chr12:81581216..81581231,+	p@chr12:81581216..81581231, +
3.47e-26	FFCP PHASE2:Mm9::chr16:32400888..32400899,+	p2@Tm4sf19
3.47e-26	FFCP PHASE1:Mm9::chr16:32400888..32400899,+	p2@Tm4sf19
3.47e-26	FFCP PHASE2:Mm9::chr12:81581216..81581231,+	p@chr12:81581216..81581231, +
1.12e-25	FFCP PHASE2:Mm9::chr17:34176173..34176200,+	p5@Col11a2
1.12e-25	FFCP PHASE1:Mm9::chr15:97806574..97806585,-	p@chr15:97806574..97806585, -
1.12e-25	FFCP PHASE2:Mm9::chr15:97806574..97806585,-	p@chr15:97806574..97806585, -
1.12e-25	FFCP PHASE1:Mm9::chr17:34176173..34176200,+	p5@Col11a2
1.36e-25	FFCP PHASE1:Mm9::chr2:180890942..180890956,-	p@chr2:180890942..180890956, -
1.36e-25	FFCP PHASE1:Mm9::chr18:78254174..78254185,-	p2@Siglec15

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=endochondral element
-|namespace=
+|namespace=FANTOM
 |obo_creation_date=
 |part_of=

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UBERON:0010363: Difference between revisions

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Latest revision as of 18:09, 12 September 2014

Ontology Tree: Loaded from BioPortal

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