FF:10007-101B4: Difference between revisions
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|top_motifs= | |top_motifs=HNF1A:6.206199919;HNF4A_NR2F1,2:6.20414706435;FOXA2:6.09055763221;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.35633151755;FOX{F1,F2,J1}:3.92843373765;FOX{D1,D2}:3.31977493404;TBP:2.89587116945;STAT2,4,6:2.87827830829;NR6A1:2.61104828927;TFCP2:2.45213118036;AR:2.31726307156;FOXO1,3,4:2.30952220375;SP1:2.08228595159;HSF1,2:1.91479228087;FOX{I1,J2}:1.89653633008;MAZ:1.83486176725;TLX2:1.82864674351;EP300:1.77787295441;FOXQ1:1.67353246764;STAT1,3:1.53278318751;GATA6:1.43951661992;FOXD3:1.43442841718;HLF:1.41604847349;NKX3-2:1.41271324262;CUX2:1.4039393904;NFIL3:1.39795530052;TLX1..3_NFIC{dimer}:1.35438639345;PATZ1:1.28703090068;NR1H4:1.27902794072;HBP1_HMGB_SSRP1_UBTF:1.25711434342;BPTF:1.24237848461;NFATC1..3:1.22265944215;PPARG:1.20702472458;SNAI1..3:1.0773037029;MTF1:1.04945185303;ZNF423:1.03536070744;MED-1{core}:0.988707861868;ALX1:0.957048373755;SMAD1..7,9:0.934346920931;EVI1:0.906763236032;ZNF238:0.863563373772;HIC1:0.858758831155;XCPE1{core}:0.853095972767;MYOD1:0.837425696878;GFI1:0.813268949406;GZF1:0.786969665886;SREBF1,2:0.786290211119;PDX1:0.773449202459;ZEB1:0.765577123413;CEBPA,B_DDIT3:0.76471422366;GCM1,2:0.759952986442;IRF1,2:0.740328441745;TFAP2{A,C}:0.733259510289;ARID5B:0.73091190123;MYFfamily:0.720860149478;PAX6:0.714993384575;GTF2I:0.714504826258;IRF7:0.678451417334;PAX1,9:0.660722543802;SRF:0.652868230022;POU6F1:0.641749554664;TEAD1:0.615508179387;MTE{core}:0.61202400919;FOXP1:0.603932403409;TGIF1:0.587791554759;NFIX:0.566816024819;SOX5:0.563637087417;HMX1:0.537081120459;MAFB:0.467063429194;T:0.449396551819;ZNF148:0.419660648291;ATF6:0.418274235227;MYBL2:0.400351947632;TBX4,5:0.397654909358;RORA:0.389154344991;MZF1:0.38705883469;PAX5:0.386491832248;ESR1:0.370608804687;TOPORS:0.365400469527;ETS1,2:0.357764980915;ALX4:0.354933036861;IKZF1:0.336027063115;HOX{A6,A7,B6,B7}:0.320313825518;HOX{A4,D4}:0.273941124386;ADNP_IRX_SIX_ZHX:0.2649859136;FOXL1:0.259963663055;EBF1:0.249028878465;TFAP2B:0.247043101152;FOXP3:0.203244731384;TEF:0.183686526702;bHLH_family:0.180085785131;EGR1..3:0.164195277389;HAND1,2:0.157033888507;MEF2{A,B,C,D}:0.126204990714;ATF4:0.11594248023;FOXN1:0.110766831121;ZFP161:0.101107044412;EN1,2:0.0886744767314;GTF2A1,2:0.0804300936;TFAP4:0.0746772377719;ELF1,2,4:0.0741548056865;AIRE:0.0704529418348;NHLH1,2:0.0527800548926;RXR{A,B,G}:0.036974080387;FOXM1:0.0258613633751;GATA4:0.0121308602252;NR3C1:-0.00237916384674;POU2F1..3:-0.00319272630666;SPIB:-0.00562848295484;NFY{A,B,C}:-0.0241075085574;SPI1:-0.0295490333298;KLF4:-0.0386502765359;RREB1:-0.108979918157;SOX{8,9,10}:-0.114170599186;ATF2:-0.120223670554;VSX1,2:-0.134147627267;PRDM1:-0.139268390248;GFI1B:-0.166329088665;RBPJ:-0.186650661685;TAL1_TCF{3,4,12}:-0.207063360606;NANOG:-0.20884945012;LMO2:-0.212565232543;JUN:-0.220465112658;ZNF143:-0.240689494746;DMAP1_NCOR{1,2}_SMARC:-0.268287619058;DBP:-0.271049275012;NKX2-1,4:-0.307791406649;PBX1:-0.33699967835;ATF5_CREB3:-0.35386566571;NR5A1,2:-0.371412102262;TP53:-0.383265872571;SOX17:-0.394668248073;BREu{core}:-0.408894448624;PAX2:-0.429200003724;HES1:-0.440378806577;NFKB1_REL_RELA:-0.453145130536;HIF1A:-0.453505288386;NFE2L1:-0.469267219831;HMGA1,2:-0.485529427236;FOSL2:-0.501441981741;NRF1:-0.55732963045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.565514630622;NFE2:-0.567524092563;IKZF2:-0.588580771301;ZIC1..3:-0.594505927595;RFX2..5_RFXANK_RFXAP:-0.605351774529;RXRA_VDR{dimer}:-0.61303782;ZBTB6:-0.644140656795;NFE2L2:-0.650262328207;RUNX1..3:-0.653924103954;UFEwm:-0.654297161754;REST:-0.666729927539;GLI1..3:-0.675581107531;LEF1_TCF7_TCF7L1,2:-0.680683621385;NANOG{mouse}:-0.685888079713;PRRX1,2:-0.739556405263;ZBTB16:-0.7694461573;RFX1:-0.777074167959;CDX1,2,4:-0.78770350635;HOX{A5,B5}:-0.818418359339;NKX2-2,8:-0.833083957806;FOS_FOS{B,L1}_JUN{B,D}:-0.835495367258;PITX1..3:-0.841651365648;SOX2:-0.842945494551;BACH2:-0.852960582369;ONECUT1,2:-0.865727443749;STAT5{A,B}:-0.898268802591;E2F1..5:-0.91784998529;AHR_ARNT_ARNT2:-0.922848577976;ESRRA:-0.985959105922;NKX2-3_NKX2-5:-1.00672063752;PAX4:-1.0098110346;CREB1:-1.02682169279;POU5F1:-1.10472620162;CDC5L:-1.11791076657;SPZ1:-1.13208459503;POU3F1..4:-1.14044767061;POU1F1:-1.20402043777;YY1:-1.22185149467;NKX3-1:-1.25683040956;MYB:-1.27317126127;XBP1:-1.30337681307;ZNF384:-1.33307324111;OCT4_SOX2{dimer}:-1.37195057208;TFDP1:-1.48652634875;PAX3,7:-1.50219543023;ELK1,4_GABP{A,B1}:-1.50296636772;CRX:-1.51430897529;HOXA9_MEIS1:-1.52906194524;LHX3,4:-1.66771450253;NKX6-1,2:-1.90951898978;PAX8:-2.35737439259 | ||
|comment= | |comment= | ||
|created_by= | |created_by= |
Revision as of 17:52, 14 March 2012
Name: | Universal RNA - Human Normal Tissues Biochain, pool1 |
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Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ExpandAdditional information |
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ExpandDownload raw sequence, BAM & CTSS |
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Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10612
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10612
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10612
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000004 tissue sample
FF:0000210 human sample
has_quality relathionship
PATO:0000461
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA