CL:0002677
From FANTOM5_SSTAR
| Name: | naive regulatory T cell |
|---|---|
| Namespace: | cell |
| Definition: | "A regulatory T cell that has not encountered antigen." [GOC:tfm] |
| Comments: | This cell type has been described as CD45RA-negative, but this doesn't fit with our current definition of naive T cell. |
| Created by: | tmeehan |
| Creation date: | 2011-08-25T03:17:21Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000792(CD4-positive, CD25-positive, alpha-beta regulatory T cell),CL:0000898(naive T cell) |
|---|
Children
| is a: | FF:0011127 (CD4-positiveCD25-positiveCD45RA- naive regulatory T cells expanded),FF:11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1),FF:11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1) |
|---|---|
| derives from: | FF:0011128 (human CD4-positiveCD25-positiveCD45RA- naive regulatory T cells sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Mouse (Mus musculus)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002677 (naive regulatory T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.61e-131 | FFCP PHASE2:Hg19::chr1:113160702..113160706,-#_68c8bf854f3083761ccaf4945f930d9f | p21@ST7L |
| 4.61e-131 | FFCP PHASE1:Hg19::chr1:113160702..113160706,-#_68c8bf854f3083761ccaf4945f930d9f | p21@ST7L |
| 5.68e-99 | FFCP PHASE1:Hg19::chr11:111410267..111410269,+#_ce87f1a7fd4facdab8d60dad3343c472 | p@chr11:111410267..111410269, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chr11:111410267..111410269,+#_ce87f1a7fd4facdab8d60dad3343c472 | p@chr11:111410267..111410269, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:73015629..73015632,+#_d544f4621466933ee6afa55cc614a23c | p@chr3:73015629..73015632, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:73015629..73015632,+#_d544f4621466933ee6afa55cc614a23c | p@chr3:73015629..73015632, + |
| 1.05e-79 | FFCP PHASE2:Hg19::chr6:138115457..138115471,+#_67397f9b6520f63aa509bdd4a2606fe3 | p@chr6:138115457..138115471, + |
| 1.05e-79 | FFCP PHASE1:Hg19::chr6:138115457..138115471,+#_67397f9b6520f63aa509bdd4a2606fe3 | p@chr6:138115457..138115471, + |
| 5.22e-79 | FFCP PHASE2:Hg19::chr7:142013392..142013402,+#_cbf9996739135afb6d442537a1d69d09 | p1@AF428125, p1@AF428127, p1@AY123171, p1@AY123177, p1@AY123180, p1@AY123183, p1@AY190091, p1@AY190112, p1@AY751872, p1@DQ875564, p1@EF592013, p1@S79336 |
| 5.22e-79 | FFCP PHASE1:Hg19::chr7:142013392..142013402,+#_cbf9996739135afb6d442537a1d69d09 | p1@AF428125, p1@AF428127, p1@AY123171, p1@AY123177, p1@AY123180, p1@AY123183, p1@AY190091, p1@AY190112, p1@AY751872, p1@DQ875564, p1@EF592013, p1@S79336 |
| 1.04e-66 | FFCP PHASE1:Hg19::chr2:69871669..69871678,+#_216955f300f9e2fcc375644d5b33a085 | p9@ENST00000418066 |
| 1.04e-66 | FFCP PHASE1:Hg19::chr19:42145518..42145524,+#_216955f300f9e2fcc375644d5b33a085 | p@chr19:42145518..42145524, + |
| 1.04e-66 | FFCP PHASE2:Hg19::chr2:69871669..69871678,+#_216955f300f9e2fcc375644d5b33a085 | p9@ENST00000418066 |
| 1.04e-66 | FFCP PHASE2:Hg19::chr19:42145518..42145524,+#_216955f300f9e2fcc375644d5b33a085 | p@chr19:42145518..42145524, + |
| 1.45e-66 | FFCP PHASE2:Hg19::chr19:42132832..42132865,+#_8bb7c1bf6f96f3aef6d56910f52aa2db | p@chr19:42132832..42132865, + |
| 1.45e-66 | FFCP PHASE1:Hg19::chr19:42132832..42132865,+#_8bb7c1bf6f96f3aef6d56910f52aa2db | p@chr19:42132832..42132865, + |
| 2.84e-66 | FFCP PHASE2:Hg19::chr10:17697543..17697546,-#_e5999edf3fbc810b1f33f14c04d281e2 | p@chr10:17697543..17697546, - |
| 2.84e-66 | FFCP PHASE1:Hg19::chr10:17697543..17697546,-#_e5999edf3fbc810b1f33f14c04d281e2 | p@chr10:17697543..17697546, - |
| 2.02e-57 | FFCP PHASE2:Hg19::chr11:95421442..95421475,-#_431f7da3d3e005e202cf96ef27dfe885 | p@chr11:95421442..95421475, - |
| 2.02e-57 | FFCP PHASE2:Hg19::chr18:13382698..13382707,+#_431f7da3d3e005e202cf96ef27dfe885 | p@chr18:13382698..13382707, + |
| 2.02e-57 | FFCP PHASE1:Hg19::chr11:95421442..95421475,-#_431f7da3d3e005e202cf96ef27dfe885 | p@chr11:95421442..95421475, - |
| 2.02e-57 | FFCP PHASE1:Hg19::chr18:13382698..13382707,+#_431f7da3d3e005e202cf96ef27dfe885 | p@chr18:13382698..13382707, + |
| 3.58e-57 | FFCP PHASE1:Hg19::chr12:122239669..122239674,-#_3407db155b376d5b71d17ed5021e2e3d | p6@ENST00000535614 |
| 3.58e-57 | FFCP PHASE2:Hg19::chr12:122239669..122239674,-#_3407db155b376d5b71d17ed5021e2e3d | p6@ENST00000535614 |
| 4.77e-57 | FFCP PHASE2:Hg19::chr16:22546145..22546152,+#_c443bba229a1b000c8c6f075bec22db8 | p@chr16:22546145..22546152, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr16:22546145..22546152,+#_c443bba229a1b000c8c6f075bec22db8 | p@chr16:22546145..22546152, + |
| 8.47e-57 | FFCP PHASE2:Hg19::chr10:24911304..24911311,+#_be73359dc5e472d4ae69746b03285a4a | p@chr10:24911304..24911311, + |
| 8.47e-57 | FFCP PHASE1:Hg19::chr10:24911304..24911311,+#_be73359dc5e472d4ae69746b03285a4a | p@chr10:24911304..24911311, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:213963849..213963858,-#_23c29a3ad10be9ab9cd9b52d3b9d9559 | p@chr2:213963849..213963858, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr21:47035633..47035642,+#_23c29a3ad10be9ab9cd9b52d3b9d9559 | p@chr21:47035633..47035642, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:213963849..213963858,-#_23c29a3ad10be9ab9cd9b52d3b9d9559 | p@chr2:213963849..213963858, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr21:47035633..47035642,+#_23c29a3ad10be9ab9cd9b52d3b9d9559 | p@chr21:47035633..47035642, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr1:186287725..186287734,-#_bad55848b2022a10d987f7457334cf68 | p@chr1:186287725..186287734, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:1709009..1709019,-#_bad55848b2022a10d987f7457334cf68 | p1@BC025336 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr1:186287725..186287734,-#_bad55848b2022a10d987f7457334cf68 | p@chr1:186287725..186287734, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:1709009..1709019,-#_bad55848b2022a10d987f7457334cf68 | p1@BC025336 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:105441012..105441027,-#_4656ecd56283480a4e92541ff8de696c | p@chr7:105441012..105441027, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:105441012..105441027,-#_4656ecd56283480a4e92541ff8de696c | p@chr7:105441012..105441027, - |
| 5.15e-50 | FFCP PHASE1:Hg19::chr5:14993035..14993045,+#_a0fd645df664b5f79b0146823f0968e6 | p@chr5:14993035..14993045, + |
| 5.15e-50 | FFCP PHASE2:Hg19::chr5:14993035..14993045,+#_a0fd645df664b5f79b0146823f0968e6 | p@chr5:14993035..14993045, + |
| 2.55e-45 | FFCP PHASE2:Hg19::chrX:153238522..153238533,-#_71da15846bb4808dc1e78b6d5bfb406f | p@chrX:153238522..153238533, - |
| 2.55e-45 | FFCP PHASE1:Hg19::chrX:153238522..153238533,-#_71da15846bb4808dc1e78b6d5bfb406f | p@chrX:153238522..153238533, - |
| 3.19e-45 | FFCP PHASE1:Hg19::chr19:42145229..42145239,+#_35395ca216e7d06790ad0fa8ab70f888 | p@chr19:42145229..42145239, + |
| 3.19e-45 | FFCP PHASE2:Hg19::chr3:66444556..66444563,-#_35395ca216e7d06790ad0fa8ab70f888 | p@chr3:66444556..66444563, - |
| 3.19e-45 | FFCP PHASE2:Hg19::chr19:42145229..42145239,+#_35395ca216e7d06790ad0fa8ab70f888 | p@chr19:42145229..42145239, + |
| 3.19e-45 | FFCP PHASE1:Hg19::chr3:66444556..66444563,-#_35395ca216e7d06790ad0fa8ab70f888 | p@chr3:66444556..66444563, - |
| 5.0e-45 | FFCP PHASE2:Hg19::chr8:1708601..1708607,+#_f988e28d427eb4400c25b9f055c2caf7 | p@chr8:1708601..1708607, + |
| 5.0e-45 | FFCP PHASE1:Hg19::chr8:1708601..1708607,+#_f988e28d427eb4400c25b9f055c2caf7 | p@chr8:1708601..1708607, + |
| 6.26e-45 | FFCP PHASE2:Hg19::chr10:6337053..6337076,+#_fbc36c3ea98846c2799a664c57927d04 | p@chr10:6337053..6337076, + |
| 6.26e-45 | FFCP PHASE1:Hg19::chr10:6337053..6337076,+#_fbc36c3ea98846c2799a664c57927d04 | p@chr10:6337053..6337076, + |
| 7.83e-45 | FFCP PHASE2:Hg19::chr2:204736259..204736275,-#_fcf3fc9b92b1c26fd73be179323b8476 | p@chr2:204736259..204736275, - |
| 7.83e-45 | FFCP PHASE1:Hg19::chr2:204736259..204736275,-#_fcf3fc9b92b1c26fd73be179323b8476 | p@chr2:204736259..204736275, - |
| 9.79e-45 | FFCP PHASE2:Hg19::chr11:128199304..128199313,+#_e41f22aae25efaa48960705f82383f80 | p@chr11:128199304..128199313, + |
| 9.79e-45 | FFCP PHASE1:Hg19::chr11:128199304..128199313,+#_e41f22aae25efaa48960705f82383f80 | p@chr11:128199304..128199313, + |
| 7.33e-41 | FFCP PHASE2:Hg19::chr6:38905902..38905931,+#_4c5367893cc882458ea107b6bfa0713a | p@chr6:38905902..38905931, + |
| 7.33e-41 | FFCP PHASE1:Hg19::chr6:38905902..38905931,+#_4c5367893cc882458ea107b6bfa0713a | p@chr6:38905902..38905931, + |
| 8.98e-41 | FFCP PHASE1:Hg19::chr13:40765017..40765053,-#_ce5ffd433f363711db77dbecad936f3b | p@chr13:40765017..40765053, - |
| 8.98e-41 | FFCP PHASE2:Hg19::chr13:40765017..40765053,-#_ce5ffd433f363711db77dbecad936f3b | p@chr13:40765017..40765053, - |
| 1.1e-40 | FFCP PHASE2:Hg19::chr21:32568033..32568068,-#_55b4e0c74b690b28a43c136062e987d9 | p@chr21:32568033..32568068, - |
| 1.1e-40 | FFCP PHASE1:Hg19::chr21:32568033..32568068,-#_55b4e0c74b690b28a43c136062e987d9 | p@chr21:32568033..32568068, - |
| 1.34e-40 | FFCP PHASE2:Hg19::chr7:44663908..44663917,+#_8f70c5da8daf429b03d853ddb589bf41 | p6@OGDH |
| 1.34e-40 | FFCP PHASE1:Hg19::chr7:44663908..44663917,+#_8f70c5da8daf429b03d853ddb589bf41 | p6@OGDH |
| 1.64e-40 | FFCP PHASE2:Hg19::chr1:118201616..118201641,+#_7be82139d9c4b3d60cd9d775c176aa2e | p@chr1:118201616..118201641, + |
| 1.64e-40 | FFCP PHASE1:Hg19::chr1:118201616..118201641,+#_7be82139d9c4b3d60cd9d775c176aa2e | p@chr1:118201616..118201641, + |
| 2.01e-40 | FFCP PHASE2:Hg19::chr10:63977707..63977724,-#_6456dc37ef506043c26ea34367d0c7e5 | p@chr10:63977707..63977724, - |
| 2.01e-40 | FFCP PHASE1:Hg19::chr10:63977707..63977724,-#_6456dc37ef506043c26ea34367d0c7e5 | p@chr10:63977707..63977724, - |
| 3.01e-40 | FFCP PHASE1:Hg19::chr10:63996620..63996627,-#_c11e3b88460a5307b00b19e0b2d8b581 | p@chr10:63996620..63996627, - |
| 3.01e-40 | FFCP PHASE2:Hg19::chr1:27853648..27853665,-#_c11e3b88460a5307b00b19e0b2d8b581 | p@chr1:27853648..27853665, - |
| 3.01e-40 | FFCP PHASE1:Hg19::chrX:49122952..49122962,-#_c11e3b88460a5307b00b19e0b2d8b581 | p@chrX:49122952..49122962, - |
| 3.01e-40 | FFCP PHASE1:Hg19::chr1:27853648..27853665,-#_c11e3b88460a5307b00b19e0b2d8b581 | p@chr1:27853648..27853665, - |
| 3.01e-40 | FFCP PHASE2:Hg19::chrX:49122952..49122962,-#_c11e3b88460a5307b00b19e0b2d8b581 | p@chrX:49122952..49122962, - |
| 3.01e-40 | FFCP PHASE2:Hg19::chr10:63996620..63996627,-#_c11e3b88460a5307b00b19e0b2d8b581 | p@chr10:63996620..63996627, - |
| 3.68e-40 | FFCP PHASE1:Hg19::chrY:23411674..23411684,+#_02546325b7beaf6db8579e59a6e6a7c7 | p@chrY:23411674..23411684, + |
| 3.68e-40 | FFCP PHASE2:Hg19::chrY:23411674..23411684,+#_02546325b7beaf6db8579e59a6e6a7c7 | p@chrY:23411674..23411684, + |
| 5.49e-40 | FFCP PHASE1:Hg19::chrX:49107447..49107461,-#_579c85bcf257c818bbd1898354aefd5d | p@chrX:49107447..49107461, - |
| 5.49e-40 | FFCP PHASE2:Hg19::chrX:49107447..49107461,-#_579c85bcf257c818bbd1898354aefd5d | p@chrX:49107447..49107461, - |
| 1.3e-37 | FFCP PHASE1:Hg19::chrX:118822985..118823001,+#_7ae667f84da005293e46a015791720e2 | p@chrX:118822985..118823001, + |
| 1.3e-37 | FFCP PHASE2:Hg19::chrX:118822985..118823001,+#_7ae667f84da005293e46a015791720e2 | p@chrX:118822985..118823001, + |
| 1.57e-37 | FFCP PHASE2:Hg19::chr3:47079691..47079696,+#_7f74196e33eab0a49919d5e37dbdbd01 | p@chr3:47079691..47079696, + |
| 1.57e-37 | FFCP PHASE1:Hg19::chr3:47079691..47079696,+#_7f74196e33eab0a49919d5e37dbdbd01 | p@chr3:47079691..47079696, + |
| 1.89e-37 | FFCP PHASE2:Hg19::chr15:63961074..63961079,+#_9a222dffe8d23196ded6ee5bca7bb674 | p@chr15:63961074..63961079, + |
| 1.89e-37 | FFCP PHASE1:Hg19::chr15:63961074..63961079,+#_9a222dffe8d23196ded6ee5bca7bb674 | p@chr15:63961074..63961079, + |
| 2.27e-37 | FFCP PHASE2:Hg19::chr19:42145174..42145183,+#_320cb1ae9073e06536b1b288afc4dbc6 | p@chr19:42145174..42145183, + |
| 2.27e-37 | FFCP PHASE1:Hg19::chr19:42145174..42145183,+#_320cb1ae9073e06536b1b288afc4dbc6 | p@chr19:42145174..42145183, + |
| 3.28e-37 | FFCP PHASE1:Hg19::chr9:133920899..133920914,+#_473ec7f0aa3a52649eb59ac345f263f7 | p@chr9:133920899..133920914, + |
| 3.28e-37 | FFCP PHASE2:Hg19::chr9:133920899..133920914,+#_473ec7f0aa3a52649eb59ac345f263f7 | p@chr9:133920899..133920914, + |
| 3.28e-37 | FFCP PHASE2:Hg19::chr3:183067487..183067500,+#_473ec7f0aa3a52649eb59ac345f263f7 | p@chr3:183067487..183067500, + |
| 3.28e-37 | FFCP PHASE1:Hg19::chr3:183067487..183067500,+#_473ec7f0aa3a52649eb59ac345f263f7 | p@chr3:183067487..183067500, + |
| 3.94e-37 | FFCP PHASE2:Hg19::chr11:128392481..128392492,+#_2baa939aa4d3b130335122bf8e5d3ecc | p@chr11:128392481..128392492, + |
| 3.94e-37 | FFCP PHASE1:Hg19::chr4:109086375..109086388,-#_2baa939aa4d3b130335122bf8e5d3ecc | p43@LEF1 |
| 3.94e-37 | FFCP PHASE1:Hg19::chr11:128392481..128392492,+#_2baa939aa4d3b130335122bf8e5d3ecc | p@chr11:128392481..128392492, + |
| 3.94e-37 | FFCP PHASE2:Hg19::chr4:109086375..109086388,-#_2baa939aa4d3b130335122bf8e5d3ecc | p43@LEF1 |
| 4.73e-37 | FFCP PHASE1:Hg19::chr14:22443271..22443281,+#_0679b47486fd1c20e156d467e245efa7 | p@chr14:22443271..22443281, + |
| 4.73e-37 | FFCP PHASE2:Hg19::chr14:22443271..22443281,+#_0679b47486fd1c20e156d467e245efa7 | p@chr14:22443271..22443281, + |
| 4.73e-37 | FFCP PHASE2:Hg19::chr8:29946317..29946322,+#_0679b47486fd1c20e156d467e245efa7 | p@chr8:29946317..29946322, + |
| 4.73e-37 | FFCP PHASE1:Hg19::chr8:29946317..29946322,+#_0679b47486fd1c20e156d467e245efa7 | p@chr8:29946317..29946322, + |
| 6.83e-37 | FFCP PHASE1:Hg19::chr12:12654246..12654268,-#_bbb6061e7d45e104812b7f733a6760d0 | p@chr12:12654246..12654268, - |
| 6.83e-37 | FFCP PHASE2:Hg19::chr12:12654246..12654268,-#_bbb6061e7d45e104812b7f733a6760d0 | p@chr12:12654246..12654268, - |
| 8.2e-37 | FFCP PHASE1:Hg19::chr16:50372905..50372915,-#_98bdffc8498615e622730c67295d8f77 | p@chr16:50372905..50372915, - |
| 8.2e-37 | FFCP PHASE2:Hg19::chr16:50372905..50372915,-#_98bdffc8498615e622730c67295d8f77 | p@chr16:50372905..50372915, - |
