UBERON:0000307
From FANTOM5_SSTAR
Name: | blastula | ||
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Namespace: | FANTOM | ||
Definition: | "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] | ||
Xrefs: |
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Synonyms: |
"blastosphere" RELATED [Wikipedia:Blastula] "blastula embryo" EXACT [BILA:0000059] | ||
Comments: | TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula | ||
Alt_id: |
UBERON:0007011 UBERON:BTO_0000128-FMA_83041 | ||
Subset: | inconsistent_with_fma |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000922(embryo) |
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develops_from: | UBERON:0007010(cleaving embryo) |
Children
develops from: | UBERON:0004734 (gastrula) |
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part of: | UBERON:0000358 (blastocyst),UBERON:0006595 (presumptive endoderm),UBERON:0006601 (presumptive ectoderm),UBERON:0006603 (presumptive mesoderm) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 11534-120A4
- 11614-122A3
- 11695-123A3
- 13283-142F7 (trophoblast stem cell line R1AB differentiation)
- 13284-142F8 (trophoblast stem cell line R1AB differentiation)
- 13285-142F9 (trophoblast stem cell line R1AB differentiation)
- 13286-142G1 (trophoblast stem cell line R1AB differentiation)
- 13287-142G2 (trophoblast stem cell line R1AB differentiation)
- 13288-142G3 (trophoblast stem cell line R1AB differentiation)
- 13289-142G4 (trophoblast stem cell line R1AB differentiation)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000307 (blastula), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data