MCL coexpression mm9:304

Phase1 CAGE Peaks

	Short description
Mm9::chr11:70051966..70051977,-	p10@0610010K14Rik
Mm9::chr11:96144576..96144603,+	p@chr11:96144576..96144603 +
Mm9::chr13:100202763..100202778,-	p@chr13:100202763..100202778 -
Mm9::chr14:70934216..70934228,+	p@chr14:70934216..70934228 +
Mm9::chr15:102821294..102821313,+	p@chr15:102821294..102821313 +
Mm9::chr15:102821339..102821340,+	p@chr15:102821339..102821340 +
Mm9::chr15:102821346..102821356,+	p@chr15:102821346..102821356 +
Mm9::chr15:102821366..102821371,+	p@chr15:102821366..102821371 +
Mm9::chr15:102821380..102821383,+	p@chr15:102821380..102821383 +
Mm9::chr15:102821403..102821417,+	p@chr15:102821403..102821417 +
Mm9::chr15:102821425..102821431,+	p@chr15:102821425..102821431 +
Mm9::chr15:102821435..102821440,+	p@chr15:102821435..102821440 +
Mm9::chr17:57220379..57220392,-	p@chr17:57220379..57220392 -
Mm9::chr18:82754269..82754276,+	p@chr18:82754269..82754276 +
Mm9::chr18:82754540..82754546,+	p@chr18:82754540..82754546 +
Mm9::chr19:37097697..37097707,-	p@chr19:37097697..37097707 -
Mm9::chr1:166368662..166368670,-	p@chr1:166368662..166368670 -
Mm9::chr1:33921508..33921524,-	p@chr1:33921508..33921524 -
Mm9::chr1:36756619..36756623,-	p@chr1:36756619..36756623 -
Mm9::chr1:74399021..74399042,+	p@chr1:74399021..74399042 +
Mm9::chr2:121131721..121131727,+	p@chr2:121131721..121131727 +
Mm9::chr4:86873494..86873500,-	p@chr4:86873494..86873500 -
Mm9::chr6:126588640..126588687,-	p@chr6:126588640..126588687 -
Mm9::chr6:30754100..30754109,+	p@chr6:30754100..30754109 +
Mm9::chr6:52175821..52175863,-	p@chr6:52175821..52175863 -
Mm9::chr7:25766629..25766641,-	p@chr7:25766629..25766641 -
Mm9::chr9:103085667..103085678,+	p@chr9:103085667..103085678 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0007389	pattern specification process	0.00827033798700138
GO:0005667	transcription factor complex	0.0143546493148905
GO:0043565	sequence-specific DNA binding	0.0143546493148905
GO:0009887	organ morphogenesis	0.0143546493148905
GO:0044451	nucleoplasm part	0.0143546493148905
GO:0019911	structural constituent of myelin sheath	0.0143546493148905
GO:0005654	nucleoplasm	0.0143546493148905
GO:0031981	nuclear lumen	0.0195844888714347
GO:0048731	system development	0.0195844888714347
GO:0043209	myelin sheath	0.0195844888714347
GO:0031974	membrane-enclosed lumen	0.0195844888714347
GO:0043233	organelle lumen	0.0195844888714347
GO:0003700	transcription factor activity	0.023674088094386
GO:0003677	DNA binding	0.02392543120091
GO:0048856	anatomical structure development	0.0250669350689919
GO:0005391	sodium:potassium-exchanging ATPase activity	0.0282412137328525
GO:0044428	nuclear part	0.0312030793391585
GO:0007275	multicellular organismal development	0.0317422487954817
GO:0009653	anatomical structure morphogenesis	0.0387280015869857
GO:0005634	nucleus	0.0387280015869857

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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