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MCL coexpression mm9:106

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:111668149..111668158,-p@chr10:111668149..111668158
-
Mm9::chr10:126918746..126918755,+p21@R3hdm2
Mm9::chr10:39338383..39338401,-p@chr10:39338383..39338401
-
Mm9::chr10:97030695..97030725,+p@chr10:97030695..97030725
+
Mm9::chr11:46503808..46503822,-p7@Timd2
Mm9::chr11:46564008..46564045,+p1@Havcr1
Mm9::chr11:46564064..46564079,+p2@Havcr1
Mm9::chr11:46564098..46564107,+p4@Havcr1
Mm9::chr11:46565908..46565916,+p@chr11:46565908..46565916
+
Mm9::chr11:68214559..68214578,-p10@Ntn1
Mm9::chr11:68214589..68214606,-p11@Ntn1
Mm9::chr12:104620760..104620761,-p@chr12:104620760..104620761
-
Mm9::chr12:104620776..104620787,-p@chr12:104620776..104620787
-
Mm9::chr12:80170796..80170800,+p@chr12:80170796..80170800
+
Mm9::chr12:92638878..92638892,+p@chr12:92638878..92638892
+
Mm9::chr12:92638906..92638917,+p@chr12:92638906..92638917
+
Mm9::chr12:92639430..92639462,+p1@Tshr
Mm9::chr12:92639464..92639478,+p2@Tshr
Mm9::chr12:92642462..92642493,+p@chr12:92642462..92642493
+
Mm9::chr13:27404521..27404525,+p2@Prl6a1
Mm9::chr13:32557315..32557329,+p@chr13:32557315..32557329
+
Mm9::chr13:61036161..61036172,-p@chr13:61036161..61036172
-
Mm9::chr13:61036176..61036186,-p@chr13:61036176..61036186
-
Mm9::chr13:61037911..61037930,-p1@Ctla2a
Mm9::chr13:61038143..61038148,-p3@Ctla2a
Mm9::chr13:95829053..95829071,-p@chr13:95829053..95829071
-
Mm9::chr14:35235900..35235910,-p@chr14:35235900..35235910
-
Mm9::chr14:35235937..35235940,-p@chr14:35235937..35235940
-
Mm9::chr14:41785917..41785953,+p@chr14:41785917..41785953
+
Mm9::chr14:41785974..41785977,+p@chr14:41785974..41785977
+
Mm9::chr14:56799615..56799618,-p@chr14:56799615..56799618
-
Mm9::chr14:56825210..56825237,+p@chr14:56825210..56825237
+
Mm9::chr15:73750444..73750448,+p@chr15:73750444..73750448
+
Mm9::chr16:20784809..20784812,-p@chr16:20784809..20784812
-
Mm9::chr16:20803423..20803434,-p@chr16:20803423..20803434
-
Mm9::chr16:30094079..30094085,+p@chr16:30094079..30094085
+
Mm9::chr16:92291354..92291359,+p@chr16:92291354..92291359
+
Mm9::chr16:96030326..96030329,-p1@ENSMUST00000156615
Mm9::chr17:25445587..25445592,+p1@Prss28
Mm9::chr17:25455594..25455602,+p1@Prss29
Mm9::chr17:35881045..35881083,-p@chr17:35881045..35881083
-
Mm9::chr17:35966913..35966936,+p5@Flot1
Mm9::chr17:69186402..69186433,+p1@Tmem200c
Mm9::chr18:68749095..68749099,-p@chr18:68749095..68749099
-
Mm9::chr19:29409136..29409142,-p1@Rln1
Mm9::chr19:55338956..55338996,+p@chr19:55338956..55338996
+
Mm9::chr1:164118982..164118990,-p@chr1:164118982..164118990
-
Mm9::chr1:170145614..170145620,-p@chr1:170145614..170145620
-
Mm9::chr1:174532714..174532721,-p3@Fcrl6
Mm9::chr1:17591974..17591994,+p1@Pi15
Mm9::chr1:188447625..188447635,-p@chr1:188447625..188447635
-
Mm9::chr1:188448176..188448182,-p@chr1:188448176..188448182
-
Mm9::chr1:188449089..188449095,-p@chr1:188449089..188449095
-
Mm9::chr1:188457900..188457913,-p@chr1:188457900..188457913
-
Mm9::chr1:188513246..188513289,-p@chr1:188513246..188513289
-
Mm9::chr1:188528872..188528902,-p4@Tgfb2
Mm9::chr1:188528892..188528901,+p@chr1:188528892..188528901
+
Mm9::chr1:188529773..188529798,+p@chr1:188529773..188529798
+
Mm9::chr1:188529859..188529878,-p1@Tgfb2
Mm9::chr1:188533348..188533350,+p@chr1:188533348..188533350
+
Mm9::chr1:40158220..40158223,+p@chr1:40158220..40158223
+
Mm9::chr1:52197272..52197276,-p@chr1:52197272..52197276
-
Mm9::chr1:54541662..54541686,-p@chr1:54541662..54541686
-
Mm9::chr2:7004903..7004922,-p@chr2:7004903..7004922
-
Mm9::chr2:75420503..75420506,+p@chr2:75420503..75420506
+
Mm9::chr3:107171294..107171301,+p@chr3:107171294..107171301
+
Mm9::chr3:107171302..107171307,+p@chr3:107171302..107171307
+
Mm9::chr3:107171337..107171347,+p@chr3:107171337..107171347
+
Mm9::chr3:121318996..121319004,-p@chr3:121318996..121319004
-
Mm9::chr3:131151965..131151985,-p@chr3:131151965..131151985
-
Mm9::chr3:131153693..131153706,-p@chr3:131153693..131153706
-
Mm9::chr3:131154017..131154021,-p@chr3:131154017..131154021
-
Mm9::chr3:131154239..131154252,-p@chr3:131154239..131154252
-
Mm9::chr3:131154291..131154300,-p@chr3:131154291..131154300
-
Mm9::chr3:131154350..131154362,-p@chr3:131154350..131154362
-
Mm9::chr3:131154363..131154373,-p@chr3:131154363..131154373
-
Mm9::chr3:131154401..131154412,-p@chr3:131154401..131154412
-
Mm9::chr3:131154523..131154532,+p@chr3:131154523..131154532
+
Mm9::chr3:142217879..142217886,+p@chr3:142217879..142217886
+
Mm9::chr4:114143506..114143510,-p@chr4:114143506..114143510
-
Mm9::chr4:141748867..141748871,-p@chr4:141748867..141748871
-
Mm9::chr4:149369914..149369920,-p@chr4:149369914..149369920
-
Mm9::chr5:113709567..113709589,-p4@Sgsm1
Mm9::chr5:113709592..113709626,-p2@Sgsm1
Mm9::chr5:136532993..136533001,+p11@2310043J07Rik
Mm9::chr5:136533008..136533013,+p9@2310043J07Rik
Mm9::chr5:143564663..143564666,-p@chr5:143564663..143564666
-
Mm9::chr5:20878514..20878532,+p1@Fgl2
Mm9::chr5:8808095..8808106,+p@chr5:8808095..8808106
+
Mm9::chr5:92691807..92691814,-p12@Naaa
Mm9::chr5:92691818..92691825,-p13@Naaa
Mm9::chr6:106679895..106679904,-p@chr6:106679895..106679904
-
Mm9::chr6:129457174..129457189,-p1@Olr1
Mm9::chr6:145024626..145024627,-p21@Bcat1
Mm9::chr6:38060420..38060425,-p@chr6:38060420..38060425
-
Mm9::chr6:38097441..38097447,-p13@D630045J12Rik
Mm9::chr6:38097449..38097457,-p16@D630045J12Rik
Mm9::chr6:65094976..65094993,-p4@Hpgds
Mm9::chr7:126744627..126744632,-p@chr7:126744627..126744632
-
Mm9::chr7:130565883..130565888,+p@chr7:130565883..130565888
+
Mm9::chr7:137388074..137388119,-p@chr7:137388074..137388119
-
Mm9::chr7:147276829..147276830,+p@chr7:147276829..147276830
+
Mm9::chr7:147279287..147279301,+p1@Prap1
Mm9::chr7:147282863..147282877,+p@chr7:147282863..147282877
+
Mm9::chr7:147282952..147282979,+p@chr7:147282952..147282979
+
Mm9::chr7:147283020..147283051,+p@chr7:147283020..147283051
+
Mm9::chr7:17319014..17319028,+p@chr7:17319014..17319028
+
Mm9::chr7:17319755..17319757,+p@chr7:17319755..17319757
+
Mm9::chr8:105871431..105871446,-p@chr8:105871431..105871446
-
Mm9::chr8:126016607..126016612,+p10@Afg3l1
Mm9::chr8:42187234..42187277,-p@chr8:42187234..42187277
-
Mm9::chr8:73107433..73107436,+p@chr8:73107433..73107436
+
Mm9::chr8:98020346..98020369,+p@chr8:98020346..98020369
+
Mm9::chr9:116079513..116079518,-p@chr9:116079513..116079518
-
Mm9::chr9:116084558..116084569,-p5@Tgfbr2
Mm9::chr9:122331238..122331246,+p@chr9:122331238..122331246
+
Mm9::chr9:28482580..28482586,+p@chr9:28482580..28482586
+
Mm9::chr9:85243991..85243994,-p@chr9:85243991..85243994
-
Mm9::chrX:71447751..71447759,+p@chrX:71447751..71447759
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs