Personal tools

CL:0000808

From FANTOM5_SSTAR

Revision as of 10:21, 12 September 2014 by Autoedit (talk | contribs)
Jump to: navigation, search
Name:DN4 thymocyte
Namespace:cell;;efo
Definition:"A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "DN4 alpha-beta immature T lymphocyte" EXACT []
"DN4 alpha-beta immature T-lymphocyte" EXACT []
"DN4 cell" EXACT []
"DN4 immature T cell" EXACT []
"DN4 immature T-cell" EXACT []
"double negative 4" EXACT []
"T.DN4.th" EXACT []
Comments:Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002489(double negative thymocyte)
develops_from:CL:0000807(DN3 thymocyte)



Children


develops from:CL:0000805 (immature single positive thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000808 (DN4 thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data