Personal tools

CL:0002594

From FANTOM5_SSTAR

Revision as of 13:49, 8 February 2012 by Autoedit (talk | contribs) (Created page with "{{CL |id=CL:0002594 |name=smooth muscle cell of the umbilical artery |namespace=cell |def="A smooth muscle cell of the umbilical artery." [GOC:tfm] |xref= |is_a=CL:00003...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Name:smooth muscle cell of the umbilical artery
Namespace:cell
Definition:"A smooth muscle cell of the umbilical artery." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:48Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0001310(umbilical artery)



Children


is a:FF:11290-117A3 (Smooth Muscle Cells - Umbilical Artery, donor1)
derives from:FF:0000176 (human smooth muscle cell of umbilical artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11290-117A3 (Smooth Muscle Cells - Umbilical Artery, donor1)
  • 11367-117I8 (Smooth Muscle Cells - Umbilical Artery, donor2)
  • 11439-118H8 (Smooth Muscle Cells - Umbilical Artery, donor3)

Mouse (Mus musculus)

  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11290-117A3 (Smooth Muscle Cells - Umbilical Artery, donor1)
  • 11367-117I8 (Smooth Muscle Cells - Umbilical Artery, donor2)
  • 11439-118H8 (Smooth Muscle Cells - Umbilical Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002594 (smooth muscle cell of the umbilical artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data