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CL:0000192

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Name:smooth muscle cell
Namespace:cell;;efo
Definition:"A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361]
Xrefs:
links:

BTO:0004576

FMA:14072
Synonyms: "myocytes, smooth muscle" EXACT [MESH:D032389]
"non-striated muscle cell" EXACT []
"SMCs" EXACT [PMID:9315361]
"smooth muscle fiber" EXACT []
Alt_id: CL:0000191


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000187(muscle cell)
develops_from:CL:0000514(smooth muscle myoblast)



Children


is a:CL:0000359 (vascular associated smooth muscle cell),CL:0002504 (enteric smooth muscle cell),CL:0002597 (smooth muscle cell of bladder),CL:0002598 (bronchial smooth muscle cell),CL:0002599 (smooth muscle cell of the esophagus),CL:0002600 (smooth muscle cell of trachea),CL:0002601 (uterine smooth muscle cell),CL:1000487 (smooth muscle cell of prostate)
derives from:FF:0000167 (smooth muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000192 (smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data