Personal tools

MCL coexpression mm9:86

From FANTOM5_SSTAR

Revision as of 16:09, 10 October 2012 by Autoedit (talk | contribs) (Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0006955;immune response;0.00258691088099285;23962,20304,54123,14469,230073,26888,17857,14129!GO:0001730;2'-5'-oligoadenyla...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr11:115889275..115889292,-p9@Gm12657
p9@Gm6421
p9@Gm6749
p9@Gm7194
p9@Gm7227
p9@H3f3a
p9@H3f3b
p9@H3f3c
Mm9::chr11:4733080..4733087,-p13@Nf2
Mm9::chr11:59337226..59337229,-p@chr11:59337226..59337229
-
Mm9::chr11:68310150..68310165,+p@chr11:68310150..68310165
+
Mm9::chr11:69479320..69479327,-p@chr11:69479320..69479327
-
Mm9::chr11:82776772..82776796,+p@chr11:82776772..82776796
+
Mm9::chr11:83342723..83342749,-p@chr11:83342723..83342749
-
Mm9::chr11:83343982..83344002,-p2@Ccl5
Mm9::chr11:83344007..83344035,-p1@Ccl5
Mm9::chr11:83344152..83344166,-p5@Ccl5
Mm9::chr11:8475592..8475595,-p@chr11:8475592..8475595
-
Mm9::chr12:104680569..104680588,-p@chr12:104680569..104680588
-
Mm9::chr12:106633788..106633790,+p@chr12:106633788..106633790
+
Mm9::chr12:21379342..21379353,-p4@Adam17
Mm9::chr12:21379387..21379407,-p1@Adam17
Mm9::chr12:3347796..3347799,-p@chr12:3347796..3347799
-
Mm9::chr12:3873135..3873145,+p@chr12:3873135..3873145
+
Mm9::chr12:74454130..74454136,+p@chr12:74454130..74454136
+
Mm9::chr13:103496369..103496373,+p@chr13:103496369..103496373
+
Mm9::chr13:103496926..103496929,+p@chr13:103496926..103496929
+
Mm9::chr13:103496979..103496992,+p@chr13:103496979..103496992
+
Mm9::chr13:103497005..103497018,+p@chr13:103497005..103497018
+
Mm9::chr13:103497023..103497030,+p@chr13:103497023..103497030
+
Mm9::chr13:20988377..20988387,+p@chr13:20988377..20988387
+
Mm9::chr13:56274518..56274522,-p@chr13:56274518..56274522
-
Mm9::chr13:76099911..76099914,+p@chr13:76099911..76099914
+
Mm9::chr13:93962194..93962218,-p3@Papd4
Mm9::chr14:103412087..103412104,+p@chr14:103412087..103412104
+
Mm9::chr14:103412110..103412119,+p@chr14:103412110..103412119
+
Mm9::chr14:103446224..103446237,+p1@Irg1
Mm9::chr14:59984271..59984298,-p1@D14Ertd668e
Mm9::chr15:6519558..6519565,+p@chr15:6519558..6519565
+
Mm9::chr15:74789551..74789596,+p@chr15:74789551..74789596
+
Mm9::chr15:74789635..74789644,+p@chr15:74789635..74789644
+
Mm9::chr15:78391431..78391478,-p@chr15:78391431..78391478
-
Mm9::chr15:78391654..78391663,-p@chr15:78391654..78391663
-
Mm9::chr15:78446356..78446382,+p@chr15:78446356..78446382
+
Mm9::chr16:37884149..37884164,+p@chr16:37884149..37884164
+
Mm9::chr16:44106307..44106309,-p@chr16:44106307..44106309
-
Mm9::chr16:77302229..77302237,+p@chr16:77302229..77302237
+
Mm9::chr16:93833516..93833522,+p@chr16:93833516..93833522
+
Mm9::chr16:97684510..97684515,-p1@Mx1
Mm9::chr17:25270386..25270405,+p2@Clcn7
Mm9::chr17:25273605..25273609,+p6@Clcn7
Mm9::chr17:31251474..31251478,+p@chr17:31251474..31251478
+
Mm9::chr17:35185378..35185397,-p@chr17:35185378..35185397
-
Mm9::chr17:47532314..47532327,-p@chr17:47532314..47532327
-
Mm9::chr17:47532347..47532365,-p@chr17:47532347..47532365
-
Mm9::chr17:57497995..57498014,+p2@Emr1
Mm9::chr17:57498105..57498146,+p1@Emr1
Mm9::chr17:57501115..57501124,+p@chr17:57501115..57501124
+
Mm9::chr19:10059393..10059419,+p@chr19:10059393..10059419
+
Mm9::chr19:11679204..11679214,-p4@Ms4a6d
Mm9::chr19:11679223..11679238,-p3@Ms4a6d
Mm9::chr19:11679239..11679256,-p2@Ms4a6d
Mm9::chr19:11679258..11679283,-p1@Ms4a6d
Mm9::chr19:11679298..11679307,-p5@Ms4a6d
Mm9::chr19:11679318..11679323,-p6@Ms4a6d
Mm9::chr19:3376383..3376420,+p@chr19:3376383..3376420
+
Mm9::chr19:34644769..34644786,+p@chr19:34644769..34644786
+
Mm9::chr19:34658018..34658023,+p1@Ifit3
Mm9::chr19:61300490..61300509,-p@chr19:61300490..61300509
-
Mm9::chr19:61300512..61300533,-p@chr19:61300512..61300533
-
Mm9::chr1:173159807..173159816,-p@chr1:173159807..173159816
-
Mm9::chr1:173159841..173159858,-p@chr1:173159841..173159858
-
Mm9::chr1:173159948..173159963,-p@chr1:173159948..173159963
-
Mm9::chr1:173159965..173159982,-p@chr1:173159965..173159982
-
Mm9::chr1:174405502..174405515,+p2@Slamf9
Mm9::chr1:174405518..174405543,+p1@Slamf9
Mm9::chr1:175697076..175697110,-p2@Ifi204
Mm9::chr1:175843035..175843063,-p1@Mnda
Mm9::chr1:175843064..175843069,-p5@Mnda
Mm9::chr1:175843121..175843130,-p4@Mnda
Mm9::chr1:74441254..74441265,-p@chr1:74441254..74441265
-
Mm9::chr2:126905973..126905984,+p5@Blvra
Mm9::chr2:126905988..126905998,+p7@Blvra
Mm9::chr2:130912020..130912045,-p1@Siglec1
Mm9::chr2:144163172..144163181,+p@chr2:144163172..144163181
+
Mm9::chr2:160190321..160190364,-p@chr2:160190321..160190364
-
Mm9::chr2:166885917..166885930,-p9@Znfx1
Mm9::chr2:166885947..166885956,-p13@Znfx1
Mm9::chr2:166888107..166888224,-p1@Znfx1
Mm9::chr2:26207754..26207757,-p3@Dnlz
Mm9::chr2:91042949..91042955,+p2@Acp2
Mm9::chr2:91046614..91046632,+p@chr2:91046614..91046632
+
Mm9::chr2:91046666..91046683,+p@chr2:91046666..91046683
+
Mm9::chr3:129672975..129673048,-p1@Ccdc109b
Mm9::chr3:142283611..142283629,+p2@Gbp2
Mm9::chr3:142283650..142283668,+p3@Gbp2
Mm9::chr3:142283686..142283697,+p5@Gbp2
Mm9::chr3:142283703..142283714,+p4@Gbp2
Mm9::chr3:151394747..151394780,-p@chr3:151394747..151394780
-
Mm9::chr3:151412841..151412883,-p1@Ifi44
Mm9::chr3:79283596..79283600,-p@chr3:79283596..79283600
-
Mm9::chr3:88425125..88425136,+p5@Arhgef2
Mm9::chr3:95358394..95358404,+p@chr3:95358394..95358404
+
Mm9::chr3:96097876..96097908,-p1@Fcgr1
Mm9::chr3:96097919..96097924,-p2@Fcgr1
Mm9::chr4:124385594..124385598,+p@chr4:124385594..124385598
+
Mm9::chr4:132409323..132409326,-p@chr4:132409323..132409326
-
Mm9::chr4:136685291..136685295,+p@chr4:136685291..136685295
+
Mm9::chr4:19969161..19969179,+p3@Ggh
Mm9::chr4:40186779..40186799,-p2@Ddx58
Mm9::chr4:43467454..43467459,-p4@Cd72
p4@LOC100504743
Mm9::chr5:115347779..115347835,+p2@Oasl2
Mm9::chr5:121337607..121337621,-p1@Oas1g
Mm9::chr5:121357519..121357542,-p1@Oas1a
Mm9::chr5:143666316..143666327,-p@chr5:143666316..143666327
-
Mm9::chr5:145888788..145888807,+p@chr5:145888788..145888807
+
Mm9::chr5:145888852..145888868,+p@chr5:145888852..145888868
+
Mm9::chr5:145888886..145888903,+p@chr5:145888886..145888903
+
Mm9::chr6:116583427..116583433,-p@chr6:116583427..116583433
-
Mm9::chr6:122527924..122527962,-p@chr6:122527924..122527962
-
Mm9::chr6:122528009..122528020,-p@chr6:122528009..122528020
-
Mm9::chr6:122528069..122528079,-p@chr6:122528069..122528079
-
Mm9::chr6:122798286..122798297,-p@chr6:122798286..122798297
-
Mm9::chr6:122805870..122805874,-p@chr6:122805870..122805874
-
Mm9::chr6:122871823..122871883,+p1@Clec4a1
Mm9::chr6:122902702..122902715,+p2@Clec4a3
Mm9::chr6:122902719..122902781,+p1@Clec4a3
Mm9::chr6:123073532..123073546,+p5@Clec4a2
Mm9::chr6:91708611..91708632,+p@chr6:91708611..91708632
+
Mm9::chr7:128207682..128207698,-p@chr7:128207682..128207698
-
Mm9::chr7:128207732..128207737,-p@chr7:128207732..128207737
-
Mm9::chr7:128207758..128207768,-p@chr7:128207758..128207768
-
Mm9::chr7:128207799..128207810,-p@chr7:128207799..128207810
-
Mm9::chr7:135282667..135282669,+p@chr7:135282667..135282669
+
Mm9::chr7:148195551..148195580,-p@chr7:148195551..148195580
-
Mm9::chr7:148195584..148195606,-p@chr7:148195584..148195606
-
Mm9::chr7:148195612..148195622,-p@chr7:148195612..148195622
-
Mm9::chr7:148195637..148195649,-p@chr7:148195637..148195649
-
Mm9::chr7:148452314..148452329,-p1@Irf7
Mm9::chr7:25877597..25877616,-p@chr7:25877597..25877616
-
Mm9::chr7:52972437..52972463,-p@chr7:52972437..52972463
-
Mm9::chr7:53174716..53174729,-p@chr7:53174716..53174729
-
Mm9::chr7:53967438..53967455,+p@chr7:53967438..53967455
+
Mm9::chr7:53967613..53967621,-p@chr7:53967613..53967621
-
Mm9::chr7:79587689..79587690,+p@chr7:79587689..79587690
+
Mm9::chr9:37046383..37046386,-p@chr9:37046383..37046386
-
Mm9::chr9:37063014..37063027,-p2@Slc37a2
Mm9::chr9:94670628..94670629,+p@chr9:94670628..94670629
+
Mm9::chrX:103798795..103798824,-p2@Cysltr1
Mm9::chrX:163645214..163645226,-p@chrX:163645214..163645226
-
Mm9::chrX:9038929..9038952,-p@chrX:9038929..9038952
-
Mm9::chrX:9046562..9046572,-p4@Cybb
Mm9::chrX:9046606..9046630,-p3@Cybb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}