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MCL coexpression mm9:90

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:31165749..31165773,-p3@Tpd52l1
Mm9::chr10:40792085..40792096,-p1@Gpr6
Mm9::chr10:40792098..40792114,-p2@Gpr6
Mm9::chr10:74523630..74523646,+p4@Bcr
Mm9::chr10:74787674..74787682,+p@chr10:74787674..74787682
+
Mm9::chr10:74787686..74787708,+p@chr10:74787686..74787708
+
Mm9::chr10:74787713..74787724,+p@chr10:74787713..74787724
+
Mm9::chr10:74787727..74787734,+p@chr10:74787727..74787734
+
Mm9::chr10:80460866..80460877,-p7@Gng7
Mm9::chr10:80460891..80460908,-p6@Gng7
Mm9::chr10:80460919..80460937,-p5@Gng7
Mm9::chr10:80477623..80477646,-p1@Gng7
Mm9::chr10:80477647..80477682,-p2@Gng7
Mm9::chr10:80945078..80945098,-p@chr10:80945078..80945098
-
Mm9::chr10:84380448..84380461,+p6@Ric8b
Mm9::chr11:100054413..100054417,-p@chr11:100054413..100054417
-
Mm9::chr11:100621055..100621068,-p1@Kcnh4
Mm9::chr11:109159386..109159393,-p5@Rgs9
Mm9::chr11:67384717..67384769,+p@chr11:67384717..67384769
+
Mm9::chr11:77651507..77651511,+p22@Myo18a
Mm9::chr11:98209742..98209748,+p12@Ppp1r1b
Mm9::chr11:98209780..98209787,+p11@Ppp1r1b
Mm9::chr12:106692245..106692257,+p3@D430019H16Rik
Mm9::chr12:106714111..106714121,+p@chr12:106714111..106714121
+
Mm9::chr12:38607287..38607315,+p5@Dgkb
Mm9::chr12:38607393..38607465,+p2@Dgkb
Mm9::chr12:41520846..41520858,+p@chr12:41520846..41520858
+
Mm9::chr12:86039719..86039769,-p2@Tmem90a
Mm9::chr13:42776156..42776172,+p1@Phactr1
Mm9::chr13:42776254..42776263,+p15@Phactr1
Mm9::chr13:42895175..42895186,+p@chr13:42895175..42895186
+
Mm9::chr13:54150457..54150487,-p@chr13:54150457..54150487
-
Mm9::chr13:54151019..54151049,-p1@Drd1a
Mm9::chr14:28689579..28689606,+p@chr14:28689579..28689606
+
Mm9::chr14:28689707..28689727,+p@chr14:28689707..28689727
+
Mm9::chr14:30245460..30245462,-p@chr14:30245460..30245462
-
Mm9::chr15:103333382..103333461,+p1@Pde1b
Mm9::chr15:103333469..103333476,+p11@Pde1b
Mm9::chr15:103333498..103333519,+p4@Pde1b
Mm9::chr15:103333681..103333690,+p7@Pde1b
Mm9::chr15:103333692..103333719,+p3@Pde1b
Mm9::chr15:78258877..78258887,+p7@Kctd17
Mm9::chr15:78541204..78541223,-p@chr15:78541204..78541223
-
Mm9::chr16:11778541..11778558,+p@chr16:11778541..11778558
+
Mm9::chr16:35154956..35155015,+p1@Adcy5
Mm9::chr16:35155616..35155631,+p2@Adcy5
Mm9::chr16:35156592..35156634,+p@chr16:35156592..35156634
+
Mm9::chr16:57121568..57121599,+p6@Tomm70a
Mm9::chr17:56511861..56511871,+p2@Kdm4b
Mm9::chr17:8994607..8994616,+p13@Pde10a
Mm9::chr17:8994633..8994653,+p1@Pde10a
Mm9::chr18:4590729..4590757,+p@chr18:4590729..4590757
+
Mm9::chr18:64424692..64424721,+p@chr18:64424692..64424721
+
Mm9::chr18:64424726..64424741,+p@chr18:64424726..64424741
+
Mm9::chr18:64424996..64425019,+p@chr18:64424996..64425019
+
Mm9::chr18:67293132..67293150,+p7@Gnal
Mm9::chr18:67293152..67293189,+p2@Gnal
Mm9::chr18:67293201..67293239,+p3@Gnal
Mm9::chr18:74225311..74225335,-p3@Mapk4
Mm9::chr18:74867662..74867697,+p@chr18:74867662..74867697
+
Mm9::chr18:85241138..85241157,+p@chr18:85241138..85241157
+
Mm9::chr18:85241159..85241166,+p@chr18:85241159..85241166
+
Mm9::chr18:85241225..85241251,+p@chr18:85241225..85241251
+
Mm9::chr19:10532035..10532047,-p1@Lrrc10b
Mm9::chr19:6400523..6400559,+p4@Rasgrp2
Mm9::chr1:155512412..155512455,+p3@Rgs8
Mm9::chr1:156573790..156573798,-p@chr1:156573790..156573798
-
Mm9::chr1:162508024..162508035,-p1@Gpr52
Mm9::chr2:110680178..110680197,-p@chr2:110680178..110680197
-
Mm9::chr2:110680212..110680219,-p@chr2:110680212..110680219
-
Mm9::chr2:110680273..110680311,-p@chr2:110680273..110680311
-
Mm9::chr2:113057183..113057196,-p2@Ryr3
Mm9::chr2:113057209..113057251,-p1@Ryr3
Mm9::chr2:115890294..115890334,-p9@Meis2
Mm9::chr2:71819043..71819052,+p12@Rapgef4
Mm9::chr2:91816465..91816503,-p5@Dgkz
Mm9::chr3:115955655..115955678,-p@chr3:115955655..115955678
-
Mm9::chr3:115955687..115955723,-p@chr3:115955687..115955723
-
Mm9::chr3:115956329..115956351,-p2@Gpr88
Mm9::chr3:115956385..115956401,-p1@Gpr88
Mm9::chr3:115956417..115956424,-p3@Gpr88
Mm9::chr3:136333484..136333491,+p14@Ppp3ca
Mm9::chr3:64912890..64912909,+p13@Kcnab1
Mm9::chr3:64912918..64912959,+p3@Kcnab1
Mm9::chr3:64912965..64913011,+p2@Kcnab1
Mm9::chr3:64913191..64913209,+p5@Kcnab1
Mm9::chr4:126850464..126850477,+p5@Dlgap3
Mm9::chr4:128798825..128798844,-p5@Hpca
Mm9::chr4:128798845..128798868,-p4@Hpca
Mm9::chr4:4065921..4065945,-p1@Penk
Mm9::chr4:42935125..42935132,+p7@N28178
Mm9::chr5:130924706..130924726,+p2@Caln1
Mm9::chr5:35332032..35332052,+p11@Rgs12
Mm9::chr5:36157005..36157020,+p6@Ablim2
Mm9::chr5:36157024..36157049,+p5@Ablim2
Mm9::chr5:36157073..36157102,+p2@Ablim2
Mm9::chr5:36157104..36157131,+p3@Ablim2
Mm9::chr5:72049330..72049354,-p4@Gabra4
Mm9::chr6:124820539..124820547,-p4@Cd4
Mm9::chr6:125661510..125661529,+p5@Ano2
Mm9::chr6:4853350..4853367,+p6@Ppp1r9a
Mm9::chr6:6813769..6813781,+p8@Dlx6
Mm9::chr6:7505053..7505067,+p1@Tac1
Mm9::chr6:99471722..99471738,-p@chr6:99471722..99471738
-
Mm9::chr7:108570205..108570240,+p2@Pde2a
Mm9::chr7:132326044..132326063,+p@chr7:132326044..132326063
+
Mm9::chr7:134006144..134006198,+p3@Hirip3
Mm9::chr7:139508746..139508812,-p3@Chst15
Mm9::chr7:16506016..16506041,-p@chr7:16506016..16506041
-
Mm9::chr7:16506127..16506140,-p@chr7:16506127..16506140
-
Mm9::chr7:19904374..19904392,+p@chr7:19904374..19904392
+
Mm9::chr7:54346748..54346759,-p7@Ptpn5
Mm9::chr7:54346781..54346788,-p15@Ptpn5
Mm9::chr7:54346794..54346803,-p13@Ptpn5
Mm9::chr7:54347084..54347095,-p17@Ptpn5
Mm9::chr8:121618902..121618932,+p@chr8:121618902..121618932
+
Mm9::chr8:25695822..25695846,-p@chr8:25695822..25695846
-
Mm9::chr8:77737224..77737233,+p@chr8:77737224..77737233
+
Mm9::chr8:77737255..77737268,+p@chr8:77737255..77737268
+
Mm9::chr8:77737329..77737360,+p1@Rasd2
Mm9::chr8:77737381..77737391,+p3@Rasd2
Mm9::chr9:104490381..104490405,+p@chr9:104490381..104490405
+
Mm9::chr9:107408215..107408223,+p@chr9:107408215..107408223
+
Mm9::chr9:112088433..112088440,-p55@Arpp21
Mm9::chr9:112088443..112088459,-p20@Arpp21
Mm9::chr9:112088460..112088471,-p31@Arpp21
Mm9::chr9:112090325..112090366,-p5@Arpp21
Mm9::chr9:112090379..112090382,-p41@Arpp21
Mm9::chr9:112090402..112090442,-p2@Arpp21
Mm9::chr9:44946379..44946388,+p20@Scn4b
Mm9::chr9:44946397..44946404,+p17@Scn4b
Mm9::chr9:44946623..44946632,+p8@Scn4b
Mm9::chr9:44946633..44946644,+p9@Scn4b
Mm9::chr9:44946659..44946677,+p3@Scn4b
Mm9::chr9:44946683..44946696,+p5@Scn4b
Mm9::chr9:44946699..44946714,+p2@Scn4b
Mm9::chr9:49148488..49148491,+p3@Drd2
Mm9::chr9:74899949..74899960,+p9@Arpp19
Mm9::chr9:75065277..75065290,+p@chr9:75065277..75065290
+
Mm9::chr9:75162042..75162072,+p2@Gnb5
Mm9::chr9:81525536..81525555,+p1@D430036J16Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}