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MCL coexpression mm9:101

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:111409806..111409861,+p1@Krr1
Mm9::chr10:12912902..12912961,-p1@Ltv1
Mm9::chr10:39966797..39966851,-p1@Rpf2
Mm9::chr10:62065009..62065039,-p1@Ddx21
Mm9::chr10:85334560..85334643,+p1@Pwp1
Mm9::chr10:88289517..88289582,-p1@Utp20
Mm9::chr11:104987781..104987833,+p1@Mettl2
Mm9::chr11:106117094..106117151,-p1@Ftsj3
Mm9::chr11:107050569..107050621,-p1@Nol11
Mm9::chr11:17111507..17111576,-p1@Pno1
Mm9::chr11:29447820..29447870,-p1@Gm8430
p1@Rps27a
Mm9::chr11:33063072..33063087,-p1@LOC100046628
p1@Npm1
Mm9::chr11:53138176..53138206,+p1@Zcchc10
Mm9::chr11:55283226..55283244,+p2@G3bp1
Mm9::chr11:74584324..74584378,+p1@Mettl16
Mm9::chr11:74584383..74584409,+p2@Mettl16
Mm9::chr11:74711583..74711608,+p1@Tsr1
Mm9::chr11:79775850..79775875,-p2@Utp6
Mm9::chr11:79775876..79775900,-p1@Utp6
Mm9::chr11:93746974..93747033,-p1@Utp18
Mm9::chr11:93747038..93747055,-p2@Utp18
Mm9::chr12:32339632..32339705,-p1@Dus4l
Mm9::chr12:34114470..34114514,+p1@Twistnb
Mm9::chr12:79963012..79963058,+p1@Eif2s1
Mm9::chr12:79963086..79963100,+p2@Eif2s1
Mm9::chr13:12487629..12487682,+p1@Heatr1
Mm9::chr13:20277191..20277233,+p3@Elmo1
Mm9::chr13:49777487..49777538,+p1@Iars
Mm9::chr13:54691374..54691395,-p2@Nop16
Mm9::chr13:69750887..69750945,+p1@Nsun2
Mm9::chr13:69750946..69750961,+p2@Nsun2
Mm9::chr13:8995250..8995298,-p1@Gtpbp4
Mm9::chr13:99032901..99032975,-p1@Utp15
Mm9::chr13:99660929..99660990,-p2@Tnpo1
Mm9::chr14:121310435..121310475,+p1@Ipo5
Mm9::chr14:31832190..31832228,-p1@Gnl3
Mm9::chr14:62058862..62058878,-p4@Kpna3
Mm9::chr14:64479127..64479198,+p1@Pinx1
Mm9::chr14:76410670..76410738,-p1@Gtf2f2
Mm9::chr14:76510692..76510735,+p1@Nufip1
Mm9::chr14:99498920..99499004,-p1@Dis3
Mm9::chr15:10415645..10415706,-p1@Brix1
Mm9::chr15:94373903..94373945,-p1@Pus7l
Mm9::chr16:11203352..11203405,-p1@Rsl1d1
Mm9::chr16:11254402..11254429,-p4@Gspt1
Mm9::chr16:30587623..30587683,-p1@Lsg1
Mm9::chr16:33967081..33967096,-p1@Umps
Mm9::chr16:43889718..43889754,-p2@Qtrtd1
Mm9::chr16:43889755..43889781,-p1@Qtrtd1
Mm9::chr16:56037841..56037923,-p1@Rg9mtd1
Mm9::chr16:87496068..87496122,-p1@Cct8
Mm9::chr17:17511510..17511558,+p1@Riok2
Mm9::chr17:34077606..34077654,+p1@Wdr46
Mm9::chr17:35472794..35472835,+p1@ENSMUST00000169342
p1@ENSMUST00000174736
Mm9::chr17:71965559..71965599,+p1@Wdr43
Mm9::chr17:79336371..79336414,-p1@Cebpz
Mm9::chr18:32996899..32996920,+p2@Wdr36
Mm9::chr18:32996925..32996961,+p1@Wdr36
Mm9::chr18:35091585..35091639,-p1@Etf1
Mm9::chr18:52625330..52625364,+p1@LOC636713
p1@Srfbp1
Mm9::chr19:11023728..11023767,-p1@Ccdc86
Mm9::chr19:27504297..27504360,-p1@D19Bwg1357e
Mm9::chr19:29175877..29175928,+p1@Rcl1
Mm9::chr19:38893646..38893732,-p1@Noc3l
Mm9::chr19:46150489..46150510,+p1@Nolc1
Mm9::chr1:120218411..120218459,+p1@Mki67ip
Mm9::chr1:123464472..123464482,-p2@Ddx18
Mm9::chr1:123464483..123464529,-p1@Ddx18
Mm9::chr1:181733756..181733833,-p1@Ahctf1
Mm9::chr1:188573163..188573172,-p2@Rrp15
Mm9::chr1:188573183..188573219,-p1@Rrp15
Mm9::chr1:34496700..34496755,+p1@Imp4
Mm9::chr1:45852330..45852360,+p1@Wdr75
Mm9::chr1:59741793..59741867,+p1@Nop58
Mm9::chr1:60154737..60154768,-p2@Wdr12
Mm9::chr1:80722928..80722932,-p@chr1:80722928..80722932
-
Mm9::chr1:88255933..88255956,-p1@Ncl
Mm9::chr2:103601335..103601443,-p1@Nat10
Mm9::chr2:11524819..11524895,-p1@Rbm17
Mm9::chr2:146838749..146838819,+p1@Xrn2
Mm9::chr2:166840783..166840836,+p1@Ddx27
Mm9::chr2:26771880..26771916,+p2@Surf2
Mm9::chr2:28696202..28696272,+p1@Ddx31
Mm9::chr2:29917537..29917563,+p5@Set
Mm9::chr2:29917565..29917598,+p3@Set
Mm9::chr2:69560917..69560933,+p3@Ppig
Mm9::chr2:83484721..83484734,+p3@Zc3h15
Mm9::chr3:121977289..121977333,+p1@Dnttip2
Mm9::chr3:146184360..146184394,-p1@Rpf1
Mm9::chr3:69525918..69525993,+p1@Nmd3
Mm9::chr3:87847020..87847050,+p1@Gpatch4
Mm9::chr3:87847053..87847072,+p2@Gpatch4
Mm9::chr3:99966287..99966337,-p1@Wdr3
Mm9::chr4:118293418..118293504,+p1@Ebna1bp2
Mm9::chr4:124707250..124707314,+p1@Gnl2
Mm9::chr4:138908420..138908442,-p3@Gm5633
p3@Gm9178
p3@Mrto4
Mm9::chr4:155135151..155135218,-p1@Atad3a
Mm9::chr5:108026779..108026803,+p2@Rpap2
Mm9::chr5:110547964..110547966,-p1@ENSMUST00000118871
Mm9::chr5:120566535..120566560,+p2@Rbm19
Mm9::chr5:130293266..130293289,+p1@Cct6a
Mm9::chr5:23289430..23289515,-p1@Pus7
Mm9::chr5:29761209..29761285,+p1@Nom1
Mm9::chr5:34679050..34679108,+p1@Rnf4
Mm9::chr5:35002717..35002787,-p1@Nop14
Mm9::chr5:77380232..77380257,-p2@Ppat
Mm9::chr5:77380585..77380614,-p4@Ppat
Mm9::chr5:88983473..88983520,+p1@Utp3
Mm9::chr5:92864101..92864129,-p1@Nup54
Mm9::chr5:92864140..92864156,-p2@Nup54
Mm9::chr6:117857813..117857850,+p4@Hnrnpf
Mm9::chr6:29114654..29114707,-p1@Rbm28
Mm9::chr6:71859040..71859070,+p1@Polr1a
Mm9::chr6:87788665..87788786,-p1@Isy1
Mm9::chr6:87801005..87801048,-p1@Cnbp
Mm9::chr7:57033704..57033759,+p1@Prmt3
Mm9::chr7:71537100..71537145,-p1@Mphosph10
Mm9::chr8:109417516..109417596,+p1@Cirh1a
Mm9::chr8:124353420..124353471,-p1@Klhdc4
Mm9::chr8:32279171..32279218,-p1@Mak16
Mm9::chr8:69010393..69010438,-p1@1810029B16Rik
Mm9::chr8:69384114..69384186,+p1@Naf1
Mm9::chr9:15110696..15110712,+p1@Taf1d
Mm9::chr9:35367045..35367078,+p1@Pus3
Mm9::chr9:53056168..53056210,-p1@Ddx10
Mm9::chrX:20235576..20235605,+p4@Uba1
Mm9::chrX:45610058..45610105,+p1@Utp14a
Mm9::chrX:72341378..72341448,+p1@Dkc1
Mm9::chrX:72518295..72518311,-p1@ENSMUST00000118416


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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