MCL coexpression mm9:189
From FANTOM5_SSTAR
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0007242 | intracellular signaling cascade | 0.0220019448240821 |
| GO:0000910 | cytokinesis | 0.0220019448240821 |
| GO:0008289 | lipid binding | 0.0220019448240821 |
| GO:0009653 | anatomical structure morphogenesis | 0.0220019448240821 |
| GO:0048667 | neuron morphogenesis during differentiation | 0.0220019448240821 |
| GO:0048812 | neurite morphogenesis | 0.0220019448240821 |
| GO:0000904 | cellular morphogenesis during differentiation | 0.0220019448240821 |
| GO:0031175 | neurite development | 0.0220019448240821 |
| GO:0050767 | regulation of neurogenesis | 0.0220019448240821 |
| GO:0019992 | diacylglycerol binding | 0.0220019448240821 |
| GO:0032989 | cellular structure morphogenesis | 0.0220019448240821 |
| GO:0000902 | cell morphogenesis | 0.0220019448240821 |
| GO:0004871 | signal transducer activity | 0.0220019448240821 |
| GO:0060089 | molecular transducer activity | 0.0220019448240821 |
| GO:0048666 | neuron development | 0.0255410999797033 |
| GO:0050793 | regulation of developmental process | 0.0360345855340333 |
| GO:0032990 | cell part morphogenesis | 0.0360345855340333 |
| GO:0048858 | cell projection morphogenesis | 0.0360345855340333 |
| GO:0030030 | cell projection organization and biogenesis | 0.0360345855340333 |
| GO:0030182 | neuron differentiation | 0.0362637128350096 |
| GO:0030695 | GTPase regulator activity | 0.0362637128350096 |
| GO:0046875 | ephrin receptor binding | 0.0362637128350096 |
| GO:0050774 | negative regulation of dendrite morphogenesis | 0.0362637128350096 |
| GO:0060081 | membrane hyperpolarization | 0.0362637128350096 |
| GO:0016527 | brain-specific angiogenesis inhibitor activity | 0.0362637128350096 |
| GO:0060080 | regulation of inhibitory postsynaptic membrane potential | 0.0362637128350096 |
| GO:0042113 | B cell activation | 0.0364165181700335 |
| GO:0004725 | protein tyrosine phosphatase activity | 0.0364165181700335 |
| GO:0048699 | generation of neurons | 0.0376790178359254 |
| GO:0007216 | metabotropic glutamate receptor signaling pathway | 0.0376790178359254 |
| GO:0048013 | ephrin receptor signaling pathway | 0.0376790178359254 |
| GO:0004726 | non-membrane spanning protein tyrosine phosphatase activity | 0.0376790178359254 |
| GO:0022008 | neurogenesis | 0.0376790178359254 |
| GO:0016043 | cellular component organization and biogenesis | 0.0376790178359254 |
| GO:0006470 | protein amino acid dephosphorylation | 0.0376790178359254 |
| GO:0035095 | behavioral response to nicotine | 0.0376790178359254 |
| GO:0014059 | regulation of dopamine secretion | 0.0376790178359254 |
| GO:0032613 | interleukin-10 production | 0.0376790178359254 |
| GO:0014046 | dopamine secretion | 0.0376790178359254 |
| GO:0050773 | regulation of dendrite development | 0.0376790178359254 |
| GO:0048814 | regulation of dendrite morphogenesis | 0.0376790178359254 |
| GO:0007154 | cell communication | 0.0376790178359254 |
| GO:0045211 | postsynaptic membrane | 0.0376790178359254 |
| GO:0050433 | regulation of catecholamine secretion | 0.0410914206991931 |
| GO:0030054 | cell junction | 0.0410914206991931 |
| GO:0016311 | dephosphorylation | 0.0410914206991931 |
| GO:0044456 | synapse part | 0.0411791898620266 |
| GO:0006793 | phosphorus metabolic process | 0.0411791898620266 |
| GO:0006796 | phosphate metabolic process | 0.0411791898620266 |
| GO:0035094 | response to nicotine | 0.0430569600830539 |
| GO:0050432 | catecholamine secretion | 0.0430569600830539 |
| GO:0048856 | anatomical structure development | 0.0464525514350064 |
| GO:0007091 | mitotic metaphase/anaphase transition | 0.0464525514350064 |
| GO:0004727 | prenylated protein tyrosine phosphatase activity | 0.0464525514350064 |
Relative expression of the co-expression cluster over median <br>Analyst:
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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
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