MCL coexpression mm9:238

Phase1 CAGE Peaks

	Short description
Mm9::chr10:106708946..106708957,+	p5@Lin7a
Mm9::chr10:108127268..108127272,-	p@chr10:108127268..108127272 -
Mm9::chr10:108156533..108156569,-	p@chr10:108156533..108156569 -
Mm9::chr10:108233957..108233960,-	p@chr10:108233957..108233960 -
Mm9::chr10:12334395..12334415,-	p@chr10:12334395..12334415 -
Mm9::chr11:71949239..71949277,-	p2@Pitpnm3
Mm9::chr11:71949307..71949338,-	p1@Pitpnm3
Mm9::chr11:81406616..81406620,-	p@chr11:81406616..81406620 -
Mm9::chr11:81672225..81672230,-	p@chr11:81672225..81672230 -
Mm9::chr11:81715436..81715440,-	p@chr11:81715436..81715440 -
Mm9::chr12:68310507..68310511,-	p@chr12:68310507..68310511 -
Mm9::chr12:90228593..90228596,+	p@chr12:90228593..90228596 +
Mm9::chr13:118391246..118391289,+	p1@Hcn1
Mm9::chr13:118391309..118391320,+	p3@Hcn1
Mm9::chr13:118455291..118455321,+	p@chr13:118455291..118455321 +
Mm9::chr13:118760390..118760404,+	p@chr13:118760390..118760404 +
Mm9::chr13:83941333..83941334,+	p@chr13:83941333..83941334 +
Mm9::chr15:30428335..30428338,+	p@chr15:30428335..30428338 +
Mm9::chr16:67016500..67016503,-	p@chr16:67016500..67016503 -
Mm9::chr16:67072872..67072875,-	p@chr16:67072872..67072875 -
Mm9::chr16:67183079..67183083,-	p@chr16:67183079..67183083 -
Mm9::chr16:67197782..67197787,-	p@chr16:67197782..67197787 -
Mm9::chr16:67278513..67278517,-	p@chr16:67278513..67278517 -
Mm9::chr16:67546202..67546209,-	p@chr16:67546202..67546209 -
Mm9::chr16:67584380..67584385,-	p@chr16:67584380..67584385 -
Mm9::chr16:67588908..67588910,-	p@chr16:67588908..67588910 -
Mm9::chr16:96924395..96924401,-	p@chr16:96924395..96924401 -
Mm9::chr1:81184077..81184080,+	p@chr1:81184077..81184080 +
Mm9::chr2:32680478..32680482,-	p@chr2:32680478..32680482 -
Mm9::chr2:77544119..77544130,-	p@chr2:77544119..77544130 -
Mm9::chr5:14521703..14521719,+	p@chr5:14521703..14521719 +
Mm9::chr6:9055073..9055074,+	p@chr6:9055073..9055074 +
Mm9::chr7:64989729..64989734,+	p@chr7:64989729..64989734 +
Mm9::chr7:72597794..72597797,-	p@chr7:72597794..72597797 -
Mm9::chr7:99384678..99384683,+	p@chr7:99384678..99384683 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0007527	adult somatic muscle development	0.0450262913742367
GO:0007525	somatic muscle development	0.0450262913742367
GO:0045176	apical protein localization	0.047395152381351
GO:0008105	asymmetric protein localization	0.047395152381351
GO:0030552	cAMP binding	0.047395152381351
GO:0030054	cell junction	0.047395152381351
GO:0016010	dystrophin-associated glycoprotein complex	0.047395152381351
GO:0031594	neuromuscular junction	0.047395152381351
GO:0016208	AMP binding	0.047395152381351
GO:0005624	membrane fraction	0.047395152381351
GO:0030551	cyclic nucleotide binding	0.0486781652053827
GO:0000267	cell fraction	0.0486781652053827

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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