Personal tools

MCL coexpression mm9:268

From FANTOM5_SSTAR

Revision as of 16:11, 10 October 2012 by Autoedit (talk | contribs) (Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0006396;RNA processing;2.84575510558761e-13;108121,20595,227715,66362,66628,107686,69639,14113,17149,68981,68219!GO:000372...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:7387304..7387356,+p1@Nup43
Mm9::chr11:101303754..101303782,+p1@Gm6341
p1@Rpl27
Mm9::chr11:45768967..45768993,-p1@Thg1l
Mm9::chr12:36883334..36883363,-p1@Bzw2
Mm9::chr12:36883368..36883402,-p2@Bzw2
Mm9::chr12:81744786..81744844,-p1@Erh
p1@Gm10131
p1@Gm6941
Mm9::chr13:100894805..100894841,+p1@Smn1
Mm9::chr13:58503810..58503833,-p2@Hnrnpk
Mm9::chr15:34372931..34372959,-p2@Gm6109
p2@Gm7429
p2@Rpl30-ps10
p2@Rpl30
Mm9::chr16:18248704..18248785,-p1@Ranbp1
Mm9::chr16:91647151..91647205,-p1@Gart
Mm9::chr17:31795674..31795711,-p1@U2af1
Mm9::chr18:10617766..10617843,+p1@Gm14277
p1@Snrpd1
Mm9::chr18:31948774..31948825,+p1@Polr2d
Mm9::chr1:71603742..71603814,+p1@Atic
Mm9::chr2:31526234..31526261,+p1@Exosc2
Mm9::chr2:41844369..41844391,-p1@ENSMUST00000167476
Mm9::chr3:54538923..54539000,-p1@Exosc8
Mm9::chr4:107552350..107552401,+p1@Magoh
Mm9::chr4:45333452..45333506,-p1@Exosc3
Mm9::chr5:114580397..114580453,+p2@Ung
Mm9::chr5:129526068..129526128,+p1@LOC100045999
p1@Ran
Mm9::chr6:117856773..117856819,+p1@Hnrnpf
Mm9::chr6:131243205..131243266,-p1@Magohb
Mm9::chr6:88415411..88415476,+p1@Ruvbl1
Mm9::chr7:19735159..19735193,+p1@Snrpd2
Mm9::chr7:28954709..28954762,+p1@Fbl
p1@LOC100044829
Mm9::chr7:73205414..73205483,+p1@Snrpa1
Mm9::chr8:96560907..96560927,-p1@Nudt21
Mm9::chr9:72961254..72961261,+p1@Rsl24d1
Mm9::chrX:102275103..102275142,+p1@2610029G23Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}