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MCL coexpression mm9:96

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:126807606..126807617,-p2@Inhbc
Mm9::chr10:128356229..128356240,-p3@Rdh5
Mm9::chr10:128356246..128356283,-p2@Rdh5
Mm9::chr10:128356304..128356309,-p4@Rdh5
Mm9::chr10:23571233..23571259,+p2@Vnn3
Mm9::chr10:23571260..23571295,+p1@Vnn3
Mm9::chr10:23571301..23571313,+p3@Vnn3
Mm9::chr10:25256171..25256202,+p@chr10:25256171..25256202
+
Mm9::chr10:4922158..4922168,+p@chr10:4922158..4922168
+
Mm9::chr10:74869686..74869699,+p2@Upb1
Mm9::chr11:109857061..109857076,-p1@Abca8b
Mm9::chr11:110006907..110006918,+p@chr11:110006907..110006918
+
Mm9::chr11:110052090..110052091,-p@chr11:110052090..110052091
-
Mm9::chr11:120469806..120469816,+p2@Npb
Mm9::chr11:18785822..18785848,-p@chr11:18785822..18785848
-
Mm9::chr11:46512110..46512125,-p3@Timd2
Mm9::chr11:46512551..46512577,-p5@Timd2
Mm9::chr11:73140078..73140123,+p@chr11:73140078..73140123
+
Mm9::chr11:75027605..75027629,+p@chr11:75027605..75027629
+
Mm9::chr11:78314581..78314593,+p@chr11:78314581..78314593
+
Mm9::chr12:104789889..104789930,+p@chr12:104789889..104789930
+
Mm9::chr12:105644914..105644938,+p1@Serpina3n
Mm9::chr12:84765585..84765623,+p@chr12:84765585..84765623
+
Mm9::chr13:104827705..104827721,-p@chr13:104827705..104827721
-
Mm9::chr13:23928766..23928779,+p@chr13:23928766..23928779
+
Mm9::chr13:56649779..56649829,-p1@Lect2
Mm9::chr13:56649835..56649848,-p4@Lect2
Mm9::chr13:56649863..56649879,-p2@Lect2
Mm9::chr13:56649895..56649908,-p3@Lect2
Mm9::chr14:18617162..18617188,+p@chr14:18617162..18617188
+
Mm9::chr14:31736733..31736751,-p1@Itih3
Mm9::chr14:32450924..32450930,-p@chr14:32450924..32450930
-
Mm9::chr14:9091839..9091892,-p4@Acox2
Mm9::chr15:10922124..10922125,+p@chr15:10922124..10922125
+
Mm9::chr15:82523492..82523512,-p@chr15:82523492..82523512
-
Mm9::chr15:82523521..82523544,-p@chr15:82523521..82523544
-
Mm9::chr15:85602655..85602680,+p5@Ppara
Mm9::chr16:22887145..22887171,-p@chr16:22887145..22887171
-
Mm9::chr16:22892108..22892124,+p1@Ahsg
Mm9::chr16:22892205..22892222,-p@chr16:22892205..22892222
-
Mm9::chr16:22892296..22892368,-p@chr16:22892296..22892368
-
Mm9::chr16:22894423..22894465,-p1@uc007ysq.1
Mm9::chr16:22894496..22894514,-p2@uc007ysq.1
Mm9::chr16:22894903..22894934,-p3@uc007ysq.1
Mm9::chr16:22895286..22895297,-p@chr16:22895286..22895297
-
Mm9::chr16:22895330..22895339,-p@chr16:22895330..22895339
-
Mm9::chr16:22895349..22895357,-p@chr16:22895349..22895357
-
Mm9::chr16:22895364..22895405,-p@chr16:22895364..22895405
-
Mm9::chr16:22895407..22895419,-p@chr16:22895407..22895419
-
Mm9::chr16:22896630..22896639,-p@chr16:22896630..22896639
-
Mm9::chr16:22896641..22896672,-p@chr16:22896641..22896672
-
Mm9::chr16:22896674..22896687,-p@chr16:22896674..22896687
-
Mm9::chr16:22898249..22898262,-p@chr16:22898249..22898262
-
Mm9::chr16:22898268..22898294,-p@chr16:22898268..22898294
-
Mm9::chr16:22898891..22898925,-p@chr16:22898891..22898925
-
Mm9::chr16:22898930..22898948,-p@chr16:22898930..22898948
-
Mm9::chr16:22898959..22898971,-p@chr16:22898959..22898971
-
Mm9::chr16:22898981..22898988,-p@chr16:22898981..22898988
-
Mm9::chr16:22899004..22899025,-p@chr16:22899004..22899025
-
Mm9::chr16:22899043..22899048,-p@chr16:22899043..22899048
-
Mm9::chr16:22899125..22899148,-p@chr16:22899125..22899148
-
Mm9::chr16:22899207..22899232,-p@chr16:22899207..22899232
-
Mm9::chr16:22899292..22899312,-p@chr16:22899292..22899312
-
Mm9::chr16:22899321..22899330,-p@chr16:22899321..22899330
-
Mm9::chr16:23029085..23029099,-p3@Kng2
Mm9::chr16:23058399..23058424,+p1@Kng1
Mm9::chr16:23290537..23290607,+p4@St6gal1
Mm9::chr16:31422354..31422364,+p4@Bdh1
Mm9::chr16:31422374..31422394,+p3@Bdh1
Mm9::chr16:31422401..31422433,+p2@Bdh1
Mm9::chr16:35932815..35932826,-p@chr16:35932815..35932826
-
Mm9::chr16:5010163..5010218,-p@chr16:5010163..5010218
-
Mm9::chr17:28574977..28574992,-p@chr17:28574977..28574992
-
Mm9::chr17:28574995..28575006,-p@chr17:28574995..28575006
-
Mm9::chr17:43407289..43407315,+p1@Gpr110
Mm9::chr17:57361613..57361654,+p@chr17:57361613..57361654
+
Mm9::chr17:57364672..57364705,+p@chr17:57364672..57364705
+
Mm9::chr17:57366261..57366266,+p@chr17:57366261..57366266
+
Mm9::chr18:61879001..61879014,-p@chr18:61879001..61879014
-
Mm9::chr18:85041321..85041326,+p@chr18:85041321..85041326
+
Mm9::chr19:12674418..12674429,+p2@Gm4952
Mm9::chr19:36871574..36871584,-p@chr19:36871574..36871584
-
Mm9::chr19:8041088..8041091,-p@chr19:8041088..8041091
-
Mm9::chr1:174920446..174920468,+p@chr1:174920446..174920468
+
Mm9::chr1:191883202..191883204,+p@chr1:191883202..191883204
+
Mm9::chr1:71934490..71934502,+p4@Gm8883
Mm9::chr1:71934548..71934577,+p3@Gm8883
Mm9::chr2:10052202..10052213,-p2@Itih2
Mm9::chr2:10052265..10052316,-p1@Itih2
Mm9::chr3:132477952..132477963,+p@chr3:132477952..132477963
+
Mm9::chr3:142394491..142394495,+p@chr3:142394491..142394495
+
Mm9::chr3:57191661..57191672,-p@chr3:57191661..57191672
-
Mm9::chr3:82835024..82835045,-p@chr3:82835024..82835045
-
Mm9::chr4:15076902..15076920,-p8@Necab1
Mm9::chr4:87527641..87527666,-p@chr4:87527641..87527666
-
Mm9::chr5:105775498..105775508,-p1@Gbp11
Mm9::chr5:110715178..110715196,-p2@Pxmp2
Mm9::chr5:122469404..122469438,-p@chr5:122469404..122469438
-
Mm9::chr5:146617438..146617452,-p1@Cyp3a44
Mm9::chr5:8995739..8995744,-p@chr5:8995739..8995744
-
Mm9::chr5:8996998..8997038,-p7@Crot
Mm9::chr5:8997089..8997093,-p8@Crot
Mm9::chr5:90904325..90904362,-p@chr5:90904325..90904362
-
Mm9::chr5:90990090..90990104,+p1@5830473C10Rik
Mm9::chr6:117562580..117562597,-p@chr6:117562580..117562597
-
Mm9::chr6:128473980..128474019,+p@chr6:128473980..128474019
+
Mm9::chr6:129347326..129347350,+p2@Clec1b
Mm9::chr6:142421595..142421635,-p1@Gys2
Mm9::chr6:51631940..51631943,-p@chr6:51631940..51631943
-
Mm9::chr6:57485404..57485415,-p5@Ppm1k
Mm9::chr7:141214497..141214517,+p@chr7:141214497..141214517
+
Mm9::chr7:28037194..28037227,+p2@Adck4
Mm9::chr7:28037275..28037285,+p5@Adck4
Mm9::chr8:106635288..106635301,+p@chr8:106635288..106635301
+
Mm9::chr8:106635312..106635332,+p@chr8:106635312..106635332
+
Mm9::chr8:106635339..106635357,+p@chr8:106635339..106635357
+
Mm9::chr8:10899915..10899928,+p1@uc009kuw.1
p1@uc009kux.1
Mm9::chr8:11071465..11071479,+p@chr8:11071465..11071479
+
Mm9::chr8:112099680..112099697,+p@chr8:112099680..112099697
+
Mm9::chr8:41977607..41977634,+p@chr8:41977607..41977634
+
Mm9::chr8:42300500..42300522,-p1@Fgl1
Mm9::chr8:46347330..46347350,-p1@F11
Mm9::chr8:46347356..46347363,-p4@F11
Mm9::chr8:46347366..46347411,-p2@F11
Mm9::chr8:46366955..46366973,-p@chr8:46366955..46366973
-
Mm9::chr8:98412410..98412420,-p3@Got2
Mm9::chr9:103119689..103119718,+p@chr9:103119689..103119718
+
Mm9::chr9:103122168..103122192,+p@chr9:103122168..103122192
+
Mm9::chr9:103125339..103125368,+p@chr9:103125339..103125368
+
Mm9::chr9:110893074..110893103,-p@chr9:110893074..110893103
-
Mm9::chr9:53418390..53418433,-p2@Acat1
Mm9::chrX:135619750..135619764,-p1@Serpina7
Mm9::chrX:135619769..135619786,-p2@Serpina7
Mm9::chrX:156943111..156943114,+p@chrX:156943111..156943114
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}