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MCL coexpression mm9:241

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:104171122..104171127,+p@chr11:104171122..104171127
+
Mm9::chr11:52174441..52174457,-p@chr11:52174441..52174457
-
Mm9::chr11:68886926..68886931,+p1@ENSMUST00000082965
Mm9::chr11:95720195..95720215,+p1@ENSMUST00000146868
p1@uc007law.1
Mm9::chr13:22133226..22133232,-p5@Hist1h4c
p5@Hist1h4d
p5@Hist1h4f
p5@Hist1h4h
p5@Hist1h4i
p5@Hist1h4j
p5@Hist1h4k
p5@Hist1h4m
p5@Hist1h4n
p6@Hist1h4a
p6@Hist1h4b
p6@Hist2h4
p6@Hist4h4
Mm9::chr16:17148308..17148320,-p@chr16:17148308..17148320
-
Mm9::chr16:17554899..17554907,-p2@4930451C15Rik
Mm9::chr17:39982953..39982969,-p@chr17:39982953..39982969
-
Mm9::chr17:69766631..69766643,-p@chr17:69766631..69766643
-
Mm9::chr18:85018335..85018342,+p@chr18:85018335..85018342
+
Mm9::chr19:7093818..7093829,-p3@Fermt3
Mm9::chr2:12901236..12901237,-p1@ENSMUST00000158941
Mm9::chr2:156853529..156853540,-p7@9830001H06Rik
Mm9::chr2:31095001..31095006,-p@chr2:31095001..31095006
-
Mm9::chr2:92274608..92274611,-p2@Cry2
Mm9::chr3:106525050..106525057,+p@chr3:106525050..106525057
+
Mm9::chr3:88100320..88100332,-p@chr3:88100320..88100332
-
Mm9::chr3:96023781..96023796,+p2@Hist2h2ab
Mm9::chr4:107475970..107475974,-p@chr4:107475970..107475974
-
Mm9::chr4:107476279..107476302,-p@chr4:107476279..107476302
-
Mm9::chr4:134409768..134409794,-p@chr4:134409768..134409794
-
Mm9::chr4:135734188..135734201,+p@chr4:135734188..135734201
+
Mm9::chr4:154975381..154975386,+p7@Slc35e2
Mm9::chr6:47738177..47738187,-p2@ENSMUST00000083767
Mm9::chr7:134339697..134339710,+p@chr7:134339697..134339710
+
Mm9::chr7:148744394..148744397,+p@chr7:148744394..148744397
+
Mm9::chr7:152024495..152024519,+p1@Fgf3
Mm9::chr7:152082369..152082376,+p2@Fgf15
Mm9::chr7:29595220..29595257,-p@chr7:29595220..29595257
-
Mm9::chr7:4740532..4740555,+p@chr7:4740532..4740555
+
Mm9::chr8:129468876..129468878,-p1@ENSMUST00000083703
Mm9::chr8:26610056..26610057,-p@chr8:26610056..26610057
-
Mm9::chr9:20837766..20837781,-p@chr9:20837766..20837781
-
Mm9::chrX:11582947..11582949,+p@chrX:11582947..11582949
+
Mm9::chrX:133654667..133654672,-p1@Esx1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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