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MCL coexpression mm9:1580

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:69660112..69660161,+p1@Plscr3
Mm9::chr14:21514178..21514207,+p1@Fut11
Mm9::chr2:118752232..118752290,+p1@Chst14
Mm9::chr2:118752291..118752311,+p2@Chst14
Mm9::chr2:118752312..118752344,+p3@Chst14


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0050651dermatan sulfate proteoglycan biosynthetic process0.00320495261052977
GO:0030205dermatan sulfate metabolic process0.00320495261052977
GO:0030208dermatan sulfate biosynthetic process0.00320495261052977
GO:0050655dermatan sulfate proteoglycan metabolic process0.00320495261052977
GO:0001537N-acetylgalactosamine 4-O-sulfotransferase activity0.00549360244756628
GO:0030206chondroitin sulfate biosynthetic process0.00549360244756628
GO:0030204chondroitin sulfate metabolic process0.00549360244756628
GO:0050650chondroitin sulfate proteoglycan biosynthetic process0.00712055615693433
GO:0050654chondroitin sulfate proteoglycan metabolic process0.00712055615693433
GO:0006024glycosaminoglycan biosynthetic process0.00815537962692766
GO:0006023aminoglycan biosynthetic process0.00815537962692766
GO:0008417fucosyltransferase activity0.0117450554949872
GO:0030166proteoglycan biosynthetic process0.0121668129786169
GO:0005794Golgi apparatus0.0121668129786169
GO:0042632cholesterol homeostasis0.0121668129786169
GO:0055088lipid homeostasis0.0121668129786169
GO:0055092sterol homeostasis0.0121668129786169
GO:0006029proteoglycan metabolic process0.0121668129786169
GO:0006022aminoglycan metabolic process0.0121668129786169
GO:0030203glycosaminoglycan metabolic process0.0121668129786169
GO:0009059macromolecule biosynthetic process0.013359548991871
GO:0042593glucose homeostasis0.0154668522003998
GO:0033500carbohydrate homeostasis0.0154668522003998
GO:0044272sulfur compound biosynthetic process0.0154668522003998
GO:0008146sulfotransferase activity0.022509751156262
GO:0016782transferase activity, transferring sulfur-containing groups0.0250777257891718
GO:0006790sulfur metabolic process0.0283964755883061
GO:0009058biosynthetic process0.0311107170377084
GO:0006486protein amino acid glycosylation0.0325304211573446
GO:0043413biopolymer glycosylation0.0325304211573446
GO:0016051carbohydrate biosynthetic process0.0325304211573446
GO:0009101glycoprotein biosynthetic process0.0334992009021274
GO:0009100glycoprotein metabolic process0.0378689794229424



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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