Personal tools

CL:0002028

From FANTOM5_SSTAR

Revision as of 16:39, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Name:basophil mast progenitor cell
Namespace:FANTOM
Definition:"A cell type that can give rise to basophil and mast cells. This cell is CD34-positive, CD117-positive, CD125-positive, FceRIa-negative, and T1/ST2-negative, and expresses Gata-1, Gata-2, C/EBPa" [GOC:ak, GOC:dsd, GOC:tfm, PMCID:PMC1312421]
Synonyms: "BMCP" EXACT []
Comments:There may be an intermediate cell type. These cells also CD13-positive, CD16-positive, CD32-positive, and integrin beta 7-positive. Transcription factors: GATA1-positive, MCP-1-positive, mitf-positive, PU.1-positive, and CEBP/a-low.
Created by:tmeehan
Creation date:2010-04-27T12:46:33Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000763(myeloid cell),CL:0002191(granulocytopoietic cell)
develops_from:CL:0000557(granulocyte monocyte progenitor cell)



Children


develops from:CL:0000831 (mast cell progenitor)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002028 (basophil mast progenitor cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.45e-195FFCP PHASE2:Hg19::chr2:160085237..160085246,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr2:160085237..160085246, +
2.45e-195FFCP PHASE1:Hg19::chr19:56673816..56673830,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:56673816..56673830, -
2.45e-195FFCP PHASE2:Hg19::chr14:25464405..25464415,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr14:25464405..25464415, -
2.45e-195FFCP PHASE1:Hg19::chr11:123986842..123986855,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr11:123986842..123986855, +
2.45e-195FFCP PHASE2:Hg19::chr1:204074045..204074052,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:204074045..204074052, +
2.45e-195FFCP PHASE1:Hg19::chr1:203732858..203732876,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:203732858..203732876, -
2.45e-195FFCP PHASE1:Hg19::chr14:24974148..24974156,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr14:24974148..24974156, +
2.45e-195FFCP PHASE1:Hg19::chr4:175501777..175501788,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:175501777..175501788, -
2.45e-195FFCP PHASE2:Hg19::chr7:106372888..106372891,-#_895f8e0d07b1954159d17dab9cd9cff9p5@ENST00000490856
2.45e-195FFCP PHASE1:Hg19::chr4:80665456..80665463,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:80665456..80665463, -
2.45e-195FFCP PHASE1:Hg19::chr2:202655190..202655199,+#_895f8e0d07b1954159d17dab9cd9cff9p14@CDK15
2.45e-195FFCP PHASE2:Hg19::chr6:23456883..23456894,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:23456883..23456894, +
2.45e-195FFCP PHASE2:Hg19::chr11:123986842..123986855,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr11:123986842..123986855, +
2.45e-195FFCP PHASE1:Hg19::chr9:75770556..75770567,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr9:75770556..75770567, +
2.45e-195FFCP PHASE1:Hg19::chr7:106372888..106372891,-#_895f8e0d07b1954159d17dab9cd9cff9p5@ENST00000490856
2.45e-195FFCP PHASE2:Hg19::chr9:116457979..116457994,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr9:116457979..116457994, +
2.45e-195FFCP PHASE1:Hg19::chrX:29959742..29959751,+#_895f8e0d07b1954159d17dab9cd9cff9p@chrX:29959742..29959751, +
2.45e-195FFCP PHASE2:Hg19::chr19:52034316..52034326,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:52034316..52034326, -
2.45e-195FFCP PHASE2:Hg19::chr6:16388683..16388699,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:16388683..16388699, -
2.45e-195FFCP PHASE2:Hg19::chr4:79698211..79698260,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:79698211..79698260, +
2.45e-195FFCP PHASE2:Hg19::chr2:12466225..12466247,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr2:12466225..12466247, +
2.45e-195FFCP PHASE1:Hg19::chr6:16388717..16388738,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:16388717..16388738, -
2.45e-195FFCP PHASE1:Hg19::chr13:109328158..109328167,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr13:109328158..109328167, +
2.45e-195FFCP PHASE1:Hg19::chr1:204074045..204074052,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:204074045..204074052, +
2.45e-195FFCP PHASE2:Hg19::chr3:148583254..148583275,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr3:148583254..148583275, +
2.45e-195FFCP PHASE2:Hg19::chr4:55406116..55406147,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:55406116..55406147, +
2.45e-195FFCP PHASE2:Hg19::chr2:102922332..102922360,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr2:102922332..102922360, +
2.45e-195FFCP PHASE1:Hg19::chr3:14425446..14425450,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr3:14425446..14425450, +
2.45e-195FFCP PHASE2:Hg19::chr4:95261065..95261071,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:95261065..95261071, +
2.45e-195FFCP PHASE2:Hg19::chr5:108071789..108071807,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr5:108071789..108071807, +
2.45e-195FFCP PHASE2:Hg19::chr14:24042158..24042170,-#_895f8e0d07b1954159d17dab9cd9cff9p18@JPH4
2.45e-195FFCP PHASE1:Hg19::chrX:100617644..100617655,-#_895f8e0d07b1954159d17dab9cd9cff9p5@BTK
2.45e-195FFCP PHASE2:Hg19::chr7:106372896..106372907,-#_895f8e0d07b1954159d17dab9cd9cff9p3@ENST00000490856
2.45e-195FFCP PHASE2:Hg19::chr15:69612281..69612294,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr15:69612281..69612294, -
2.45e-195FFCP PHASE1:Hg19::chr14:25464405..25464415,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr14:25464405..25464415, -
2.45e-195FFCP PHASE2:Hg19::chr2:160085182..160085196,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr2:160085182..160085196, +
2.45e-195FFCP PHASE2:Hg19::chr3:148601435..148601446,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr3:148601435..148601446, +
2.45e-195FFCP PHASE2:Hg19::chr19:7923338..7923341,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:7923338..7923341, -
2.45e-195FFCP PHASE1:Hg19::chr11:123967181..123967213,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr11:123967181..123967213, -
2.45e-195FFCP PHASE2:Hg19::chr19:56673770..56673786,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:56673770..56673786, -
2.45e-195FFCP PHASE1:Hg19::chr4:55523948..55523989,+#_895f8e0d07b1954159d17dab9cd9cff9p3@KIT
2.45e-195FFCP PHASE1:Hg19::chr7:106372896..106372907,-#_895f8e0d07b1954159d17dab9cd9cff9p3@ENST00000490856
2.45e-195FFCP PHASE1:Hg19::chr19:52034316..52034326,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:52034316..52034326, -
2.45e-195FFCP PHASE1:Hg19::chrX:29959760..29959772,+#_895f8e0d07b1954159d17dab9cd9cff9p@chrX:29959760..29959772, +
2.45e-195FFCP PHASE2:Hg19::chr19:51961061..51961069,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:51961061..51961069, -
2.45e-195FFCP PHASE1:Hg19::chr5:108071574..108071598,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr5:108071574..108071598, -
2.45e-195FFCP PHASE2:Hg19::chr15:42221779..42221787,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr15:42221779..42221787, +
2.45e-195FFCP PHASE2:Hg19::chr15:50556017..50556029,-#_895f8e0d07b1954159d17dab9cd9cff9p3@HDC
2.45e-195FFCP PHASE2:Hg19::chr11:123967181..123967213,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr11:123967181..123967213, -
2.45e-195FFCP PHASE2:Hg19::chr1:20513747..20513758,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:20513747..20513758, -
2.45e-195FFCP PHASE2:Hg19::chr1:247737511..247737525,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:247737511..247737525, +
2.45e-195FFCP PHASE2:Hg19::chr4:80665456..80665463,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:80665456..80665463, -
2.45e-195FFCP PHASE2:Hg19::chr7:106372908..106372919,-#_895f8e0d07b1954159d17dab9cd9cff9p2@ENST00000490856
2.45e-195FFCP PHASE1:Hg19::chr16:1280084..1280116,-#_895f8e0d07b1954159d17dab9cd9cff9p2@TPSB2
2.45e-195FFCP PHASE2:Hg19::chr2:202655190..202655199,+#_895f8e0d07b1954159d17dab9cd9cff9p14@CDK15
2.45e-195FFCP PHASE1:Hg19::chr6:16547983..16547995,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:16547983..16547995, -
2.45e-195FFCP PHASE2:Hg19::chr4:175501777..175501788,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:175501777..175501788, -
2.45e-195FFCP PHASE2:Hg19::chr19:52033117..52033128,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:52033117..52033128, -
2.45e-195FFCP PHASE1:Hg19::chr19:7923338..7923341,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:7923338..7923341, -
2.45e-195FFCP PHASE1:Hg19::chr2:160085237..160085246,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr2:160085237..160085246, +
2.45e-195FFCP PHASE1:Hg19::chr19:56673770..56673786,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:56673770..56673786, -
2.45e-195FFCP PHASE1:Hg19::chr19:51961061..51961069,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:51961061..51961069, -
2.45e-195FFCP PHASE2:Hg19::chr9:75770556..75770567,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr9:75770556..75770567, +
2.45e-195FFCP PHASE1:Hg19::chr11:59855794..59855805,+#_895f8e0d07b1954159d17dab9cd9cff9p5@MS4A2
2.45e-195FFCP PHASE1:Hg19::chr11:123985831..123985858,+#_895f8e0d07b1954159d17dab9cd9cff9p2@VWA5A
2.45e-195FFCP PHASE1:Hg19::chr7:106372908..106372919,-#_895f8e0d07b1954159d17dab9cd9cff9p2@ENST00000490856
2.45e-195FFCP PHASE1:Hg19::chr15:69612281..69612294,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr15:69612281..69612294, -
2.45e-195FFCP PHASE2:Hg19::chrX:29959742..29959751,+#_895f8e0d07b1954159d17dab9cd9cff9p@chrX:29959742..29959751, +
2.45e-195FFCP PHASE2:Hg19::chr1:194021388..194021407,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:194021388..194021407, +
2.45e-195FFCP PHASE1:Hg19::chr14:24042158..24042170,-#_895f8e0d07b1954159d17dab9cd9cff9p18@JPH4
2.45e-195FFCP PHASE2:Hg19::chr6:16388717..16388738,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:16388717..16388738, -
2.45e-195FFCP PHASE2:Hg19::chr14:54899928..54899942,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr14:54899928..54899942, -
2.45e-195FFCP PHASE1:Hg19::chr1:20513747..20513758,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:20513747..20513758, -
2.45e-195FFCP PHASE1:Hg19::chr11:59857223..59857242,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr11:59857223..59857242, +
2.45e-195FFCP PHASE1:Hg19::chr11:123988337..123988344,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr11:123988337..123988344, +
2.45e-195FFCP PHASE1:Hg19::chr6:23456883..23456894,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:23456883..23456894, +
2.45e-195FFCP PHASE2:Hg19::chr11:123985831..123985858,+#_895f8e0d07b1954159d17dab9cd9cff9p2@VWA5A
2.45e-195FFCP PHASE2:Hg19::chr3:14425446..14425450,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr3:14425446..14425450, +
2.45e-195FFCP PHASE1:Hg19::chr1:247737511..247737525,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:247737511..247737525, +
2.45e-195FFCP PHASE1:Hg19::chr6:57326117..57326124,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:57326117..57326124, +
2.45e-195FFCP PHASE2:Hg19::chr11:59855794..59855805,+#_895f8e0d07b1954159d17dab9cd9cff9p5@MS4A2
2.45e-195FFCP PHASE2:Hg19::chr14:24974148..24974156,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr14:24974148..24974156, +
2.45e-195FFCP PHASE1:Hg19::chr19:52033117..52033128,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:52033117..52033128, -
2.45e-195FFCP PHASE2:Hg19::chr10:131653288..131653294,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr10:131653288..131653294, -
2.45e-195FFCP PHASE1:Hg19::chr9:116457979..116457994,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr9:116457979..116457994, +
2.45e-195FFCP PHASE2:Hg19::chrX:100617644..100617655,-#_895f8e0d07b1954159d17dab9cd9cff9p5@BTK
2.45e-195FFCP PHASE1:Hg19::chr15:42221779..42221787,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr15:42221779..42221787, +
2.45e-195FFCP PHASE1:Hg19::chr6:16388683..16388699,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:16388683..16388699, -
2.45e-195FFCP PHASE1:Hg19::chr4:79698211..79698260,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr4:79698211..79698260, +
2.45e-195FFCP PHASE1:Hg19::chr15:50556017..50556029,-#_895f8e0d07b1954159d17dab9cd9cff9p3@HDC
2.45e-195FFCP PHASE1:Hg19::chr2:12466225..12466247,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr2:12466225..12466247, +
2.45e-195FFCP PHASE2:Hg19::chr6:57326117..57326124,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr6:57326117..57326124, +
2.45e-195FFCP PHASE2:Hg19::chr11:123988337..123988344,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr11:123988337..123988344, +
2.45e-195FFCP PHASE1:Hg19::chr11:47175922..47175952,+#_895f8e0d07b1954159d17dab9cd9cff9p3@C11orf49
2.45e-195FFCP PHASE1:Hg19::chr1:194021388..194021407,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr1:194021388..194021407, +
2.45e-195FFCP PHASE2:Hg19::chr4:55523948..55523989,+#_895f8e0d07b1954159d17dab9cd9cff9p3@KIT
2.45e-195FFCP PHASE1:Hg19::chr10:131653288..131653294,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr10:131653288..131653294, -
2.45e-195FFCP PHASE1:Hg19::chr3:148583254..148583275,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr3:148583254..148583275, +
2.45e-195FFCP PHASE2:Hg19::chr19:56673816..56673830,-#_895f8e0d07b1954159d17dab9cd9cff9p@chr19:56673816..56673830, -
2.45e-195FFCP PHASE1:Hg19::chr8:81214082..81214083,+#_895f8e0d07b1954159d17dab9cd9cff9p@chr8:81214082..81214083, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002028&oldid=3275399"