UBERON:0002101

Name:	limb
Xrefs:	Expandlinks: AAO:0010336 EFO:0000876 EHDAA:1697 EHDAA:8273 EHDAA2:0003172 EMAPA:16405 FMA:7182 GAID:36 galen:Extremity MA:0000007 MAT:0000090 MIAA:0000090 ncithesaurus:Limb OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA SCTID:243996003 VHOG:0000336 XAO:0003027
Synonyms:	"limb sensu vertebrata" EXACT [MAT:0000090] "tetrapod limb" EXACT []
Alt_id:	UBERON:FMA_7182-MA_0000007-MIAA_0000090-XAO_0003027
Subset:	uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0004708(paired limb/fin)
develops_from:	UBERON:0004347(limb bud)

Children

is a:

UBERON:0002102 (forelimb),UBERON:0002103 (hindlimb),UBERON:0003285 (limb of embryo)

part of:

UBERON:0001419 (skin of limb),UBERON:0002428 (limb bone),UBERON:0002472 (stylopod),UBERON:0002529 (limb segment),UBERON:0003587 (limb connective tissue),UBERON:0003606 (limb long bone),UBERON:0003657 (limb joint),UBERON:0003661 (limb muscle),UBERON:0004381 (skeleton of limb),UBERON:0004480 (musculature of limb),UBERON:0009749 (limb mesenchyme),UBERON:0010712 (limb skeleton subdivision),UBERON:0011139 (synovial limb joint),UBERON:0015061 (limb endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10232-103I7 (chicken wing buds, day03 (HH20))
• 10264-104D3
• 10267-104D6
• 10273-104E3
• 10281-104F2
• 10282-104F3 (skeletal muscle - soleus muscle, donor1)
• 10285-104F6
• 10286-104F7 (Skin - palm, donor1)
• 10292-104G4 (achilles tendon, donor2)
• 10295-104G7 (cruciate ligament, donor2)

... further results Mouse (Mus musculus)

• 10232-103I7 (chicken wing buds, day03 (HH20))
• 10264-104D3
• 10267-104D6
• 10273-104E3
• 10281-104F2
• 10282-104F3 (skeletal muscle - soleus muscle, donor1)
• 10285-104F6
• 10286-104F7 (Skin - palm, donor1)
• 10292-104G4 (achilles tendon, donor2)
• 10295-104G7 (cruciate ligament, donor2)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002101 (limb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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Search:

P-value	FFCP	Short description

P-value	FFCP	Short description
5.42e-195	FFCP PHASE2:Hg19::chr7:128483294..128483304,+	p@chr7:128483294..128483304, +
5.42e-195	FFCP PHASE1:Hg19::chr4:186423235..186423240,-	p@chr4:186423235..186423240, -
5.42e-195	FFCP PHASE1:Hg19::chr22:25535147..25535150,+	p@chr22:25535147..25535150, +
5.42e-195	FFCP PHASE1:Hg19::chr10:79759687..79759690,+	p@chr10:79759687..79759690, +
5.42e-195	FFCP PHASE2:Hg19::chr2:179396370..179396375,-	p@chr2:179396370..179396375, -
5.42e-195	FFCP PHASE2:Hg19::chr4:85166508..85166512,+	p@chr4:85166508..85166512, +
5.42e-195	FFCP PHASE1:Hg19::chr2:179396370..179396375,-	p@chr2:179396370..179396375, -
5.42e-195	FFCP PHASE2:Hg19::chr10:97176812..97176813,+	p@chr10:97176812..97176813, +
5.42e-195	FFCP PHASE1:Hg19::chr7:128483294..128483304,+	p@chr7:128483294..128483304, +
5.42e-195	FFCP PHASE1:Hg19::chr4:85166508..85166512,+	p@chr4:85166508..85166512, +
5.42e-195	FFCP PHASE2:Hg19::chr11:3691037..3691040,+	p@chr11:3691037..3691040, +
5.42e-195	FFCP PHASE2:Hg19::chr4:186423235..186423240,-	p@chr4:186423235..186423240, -
5.42e-195	FFCP PHASE2:Hg19::chr2:76859417..76859418,+	p@chr2:76859417..76859418, +
5.42e-195	FFCP PHASE2:Hg19::chr10:79759687..79759690,+	p@chr10:79759687..79759690, +
5.42e-195	FFCP PHASE1:Hg19::chr2:76859417..76859418,+	p@chr2:76859417..76859418, +
5.42e-195	FFCP PHASE2:Hg19::chr22:25535147..25535150,+	p@chr22:25535147..25535150, +
5.42e-195	FFCP PHASE1:Hg19::chr10:97176812..97176813,+	p@chr10:97176812..97176813, +
5.42e-195	FFCP PHASE1:Hg19::chr11:3691037..3691040,+	p@chr11:3691037..3691040, +
9.37e-99	FFCP PHASE1:Hg19::chr5:137206180..137206187,+	p@chr5:137206180..137206187, +
9.37e-99	FFCP PHASE2:Hg19::chr6:33716557..33716600,-	p@chr6:33716557..33716600, -
9.37e-99	FFCP PHASE2:Hg19::chr2:168102721..168102729,+	p77@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr2:152534468..152534476,-	p@chr2:152534468..152534476, -
9.37e-99	FFCP PHASE2:Hg19::chr2:168106638..168106641,+	p93@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr5:117747577..117747580,+	p@chr5:117747577..117747580, +
9.37e-99	FFCP PHASE2:Hg19::chr2:168105362..168105368,+	p46@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr2:179399371..179399376,-	p@chr2:179399371..179399376, -
9.37e-99	FFCP PHASE1:Hg19::chr3:188070178..188070183,+	p@chr3:188070178..188070183, +
9.37e-99	FFCP PHASE1:Hg19::chr13:114067922..114067931,-	p@chr13:114067922..114067931, -
9.37e-99	FFCP PHASE2:Hg19::chr22:36000901..36000903,-	p@chr22:36000901..36000903, -
9.37e-99	FFCP PHASE2:Hg19::chr5:175125123..175125125,+	p@chr5:175125123..175125125, +
9.37e-99	FFCP PHASE1:Hg19::chr1:119487319..119487331,-	p@chr1:119487319..119487331, -
9.37e-99	FFCP PHASE2:Hg19::chr7:66800928..66800936,+	p1@ENST00000430244, p1@uc003tvu.2
9.37e-99	FFCP PHASE1:Hg19::chr2:168106638..168106641,+	p93@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr5:117747577..117747580,+	p@chr5:117747577..117747580, +
9.37e-99	FFCP PHASE2:Hg19::chr5:172318159..172318160,+	p@chr5:172318159..172318160, +
9.37e-99	FFCP PHASE2:Hg19::chr1:145478051..145478060,-	p@chr1:145478051..145478060, -
9.37e-99	FFCP PHASE2:Hg19::chr2:152525581..152525588,-	p@chr2:152525581..152525588, -
9.37e-99	FFCP PHASE1:Hg19::chr22:36000901..36000903,-	p@chr22:36000901..36000903, -
9.37e-99	FFCP PHASE2:Hg19::chr2:168104676..168104679,+	p104@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr5:175125123..175125125,+	p@chr5:175125123..175125125, +
9.37e-99	FFCP PHASE1:Hg19::chr2:168102721..168102729,+	p77@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr8:144542829..144542857,-	p@chr8:144542829..144542857, -
9.37e-99	FFCP PHASE2:Hg19::chr15:51060095..51060101,+	p@chr15:51060095..51060101, +
9.37e-99	FFCP PHASE1:Hg19::chr2:168105362..168105368,+	p46@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr2:64069328..64069334,-	p7@FLJ36848
9.37e-99	FFCP PHASE2:Hg19::chr2:168105987..168105994,+	p54@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr2:179399371..179399376,-	p@chr2:179399371..179399376, -
9.37e-99	FFCP PHASE2:Hg19::chr2:168104926..168104927,+	p108@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr5:172318159..172318160,+	p@chr5:172318159..172318160, +
9.37e-99	FFCP PHASE1:Hg19::chr15:51060095..51060101,+	p@chr15:51060095..51060101, +
9.37e-99	FFCP PHASE2:Hg19::chr2:179514306..179514308,-	p@chr2:179514306..179514308, -
9.37e-99	FFCP PHASE1:Hg19::chr2:152525581..152525588,-	p@chr2:152525581..152525588, -
9.37e-99	FFCP PHASE2:Hg19::chr13:51335579..51335582,+	p@chr13:51335579..51335582, +
9.37e-99	FFCP PHASE2:Hg19::chr2:152553958..152553964,-	p@chr2:152553958..152553964, -
9.37e-99	FFCP PHASE2:Hg19::chr2:152499727..152499734,-	p@chr2:152499727..152499734, -
9.37e-99	FFCP PHASE1:Hg19::chr2:168105987..168105994,+	p54@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr1:145478051..145478060,-	p@chr1:145478051..145478060, -
9.37e-99	FFCP PHASE2:Hg19::chr2:152520248..152520253,-	p@chr2:152520248..152520253, -
9.37e-99	FFCP PHASE1:Hg19::chr13:51335579..51335582,+	p@chr13:51335579..51335582, +
9.37e-99	FFCP PHASE1:Hg19::chr2:179514306..179514308,-	p@chr2:179514306..179514308, -
9.37e-99	FFCP PHASE1:Hg19::chr2:168104676..168104679,+	p104@XIRP2
9.37e-99	FFCP PHASE2:Hg19::chr8:144542829..144542857,-	p@chr8:144542829..144542857, -
9.37e-99	FFCP PHASE1:Hg19::chr6:33716557..33716600,-	p@chr6:33716557..33716600, -
9.37e-99	FFCP PHASE1:Hg19::chr2:152553958..152553964,-	p@chr2:152553958..152553964, -
9.37e-99	FFCP PHASE1:Hg19::chr2:152499727..152499734,-	p@chr2:152499727..152499734, -
9.37e-99	FFCP PHASE1:Hg19::chr2:64069328..64069334,-	p7@FLJ36848
9.37e-99	FFCP PHASE1:Hg19::chr2:168104926..168104927,+	p108@XIRP2
9.37e-99	FFCP PHASE1:Hg19::chr7:66800928..66800936,+	p1@ENST00000430244, p1@uc003tvu.2
9.37e-99	FFCP PHASE1:Hg19::chr2:152520248..152520253,-	p@chr2:152520248..152520253, -
9.37e-99	FFCP PHASE2:Hg19::chr5:137206180..137206187,+	p@chr5:137206180..137206187, +
9.37e-99	FFCP PHASE2:Hg19::chr3:188070178..188070183,+	p@chr3:188070178..188070183, +
9.37e-99	FFCP PHASE2:Hg19::chr2:152534468..152534476,-	p@chr2:152534468..152534476, -
9.37e-99	FFCP PHASE2:Hg19::chr13:114067922..114067931,-	p@chr13:114067922..114067931, -
9.37e-99	FFCP PHASE2:Hg19::chr1:119487319..119487331,-	p@chr1:119487319..119487331, -
2.55e-98	FFCP PHASE2:Hg19::chr22:26299595..26299605,+	p@chr22:26299595..26299605, +
2.55e-98	FFCP PHASE1:Hg19::chr2:152566311..152566321,-	p@chr2:152566311..152566321, -
2.55e-98	FFCP PHASE2:Hg19::chr10:29918007..29918031,-	p@chr10:29918007..29918031, -
2.55e-98	FFCP PHASE2:Hg19::chr12:122884464..122884467,-	p38@CLIP1
2.55e-98	FFCP PHASE2:Hg19::chr2:152590465..152590472,-	p@chr2:152590465..152590472, -
2.55e-98	FFCP PHASE1:Hg19::chr2:168102459..168102468,+	p73@XIRP2
2.55e-98	FFCP PHASE1:Hg19::chr22:26299595..26299605,+	p@chr22:26299595..26299605, +
2.55e-98	FFCP PHASE2:Hg19::chr21:47769234..47769239,+	p@chr21:47769234..47769239, +
2.55e-98	FFCP PHASE1:Hg19::chr10:97037060..97037066,-	p@chr10:97037060..97037066, -
2.55e-98	FFCP PHASE1:Hg19::chr5:95180155..95180172,+	p@chr5:95180155..95180172, +
2.55e-98	FFCP PHASE2:Hg19::chr2:179656442..179656451,-	p@chr2:179656442..179656451, -
2.55e-98	FFCP PHASE2:Hg19::chr12:102079632..102079647,-	p@chr12:102079632..102079647, -
2.55e-98	FFCP PHASE1:Hg19::chr21:47769234..47769239,+	p@chr21:47769234..47769239, +
2.55e-98	FFCP PHASE1:Hg19::chr10:29918007..29918031,-	p@chr10:29918007..29918031, -
2.55e-98	FFCP PHASE2:Hg19::chr6:125535391..125535409,+	p@chr6:125535391..125535409, +
2.55e-98	FFCP PHASE1:Hg19::chr2:152590465..152590472,-	p@chr2:152590465..152590472, -
2.55e-98	FFCP PHASE2:Hg19::chr3:35732964..35732965,+	p@chr3:35732964..35732965, +
2.55e-98	FFCP PHASE2:Hg19::chr3:69168368..69168389,-	p@chr3:69168368..69168389, -
2.55e-98	FFCP PHASE2:Hg19::chr2:29398214..29398229,+	p27@CLIP4
2.55e-98	FFCP PHASE1:Hg19::chr3:69168368..69168389,-	p@chr3:69168368..69168389, -
2.55e-98	FFCP PHASE2:Hg19::chr3:46924232..46924241,+	p@chr3:46924232..46924241, +
2.55e-98	FFCP PHASE1:Hg19::chr2:179656442..179656451,-	p@chr2:179656442..179656451, -
2.55e-98	FFCP PHASE1:Hg19::chr12:122884464..122884467,-	p38@CLIP1
2.55e-98	FFCP PHASE2:Hg19::chr5:95180155..95180172,+	p@chr5:95180155..95180172, +
2.55e-98	FFCP PHASE2:Hg19::chr18:8608021..8608050,+	p@chr18:8608021..8608050, +
2.55e-98	FFCP PHASE1:Hg19::chr3:35732964..35732965,+	p@chr3:35732964..35732965, +

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