UBERON:0005910
From FANTOM5_SSTAR
Name: | transitional epithelium | |
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Definition: | "Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium] | |
Xrefs: |
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Synonyms: |
"epithelium transitionale" EXACT [FMA:63914] "urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium] | |
Comments: | see comments for urothelium |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000486(multilaminar epithelium),UBERON:0005911(endo-epithelium) |
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Children
is a: | UBERON:0000365 (urothelium) |
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derives from: | FF:0102869 (transitional cell carcinoma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10492-107B6 (transitional-cell carcinoma cell line:JMSU1)
- 10565-108A7
- 10587-108D2
- 10707-109H5 (transitional cell carcinoma cell line:Hs 769.T)
- 10751-110D4
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005910 (transitional epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data