CL:0000244
From FANTOM5_SSTAR
Name: | transitional epithelial cell | |
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Namespace: | FANTOM | |
Definition: | "A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium." [GOC:tfm, ISBN:0721662544] | |
Xrefs: |
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Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000066(epithelial cell),CL:0002371(somatic cell) |
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Children
is a: | CL:0000731 (urothelial cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Mouse (Mus musculus)
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000244 (transitional epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data