CL:0000322

Name:	pneumocyte
Namespace:	FANTOM
Definition:	"An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [GOC:tfm, PMID:20054144]
Xrefs:	Expandlinks: BTO:0000395 FMA:62499
Synonyms:	"alveolar epithelial cell" EXACT [] "pneumonocyte" EXACT []

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0010003(epithelial cell of alveolus of lung)
part_of:	UBERON:0004821(pulmonary alveolus epithelium)

Children

derives from:	FF:0000012 (human alveolar epithelial cell sample),FF:0102060 (bronchioalveolar carcinoma cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
• 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
• 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
• 11510-119G7 (Alveolar Epithelial Cells, donor1)
• 11671-122G6 (Alveolar Epithelial Cells, donor3)

Mouse (Mus musculus)

• 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
• 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
• 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
• 11510-119G7 (Alveolar Epithelial Cells, donor1)
• 11671-122G6 (Alveolar Epithelial Cells, donor3)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000322 (pneumocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
2.39e-66	FFCP PHASE2:Hg19::chr14:36536932..36536937,-	p@chr14:36536932..36536937, -
2.39e-66	FFCP PHASE2:Hg19::chr20:2779313..2779314,-	p16@CPXM1
2.39e-66	FFCP PHASE1:Hg19::chr6:137314390..137314394,-	p1@ENST00000418699, p1@ENST00000432330
2.39e-66	FFCP PHASE2:Hg19::chr10:101690855..101690861,-	p14@DNMBP
2.39e-66	FFCP PHASE1:Hg19::chr3:87647430..87647437,-	p@chr3:87647430..87647437, -
2.39e-66	FFCP PHASE2:Hg19::chr6:137314390..137314394,-	p1@ENST00000418699, p1@ENST00000432330
2.39e-66	FFCP PHASE2:Hg19::chr3:87647430..87647437,-	p@chr3:87647430..87647437, -
2.39e-66	FFCP PHASE2:Hg19::chr16:11118533..11118538,+	p12@CLEC16A
2.39e-66	FFCP PHASE1:Hg19::chr20:2779140..2779150,-	p9@CPXM1
2.39e-66	FFCP PHASE1:Hg19::chr14:36536932..36536937,-	p@chr14:36536932..36536937, -
2.39e-66	FFCP PHASE2:Hg19::chr7:63539651..63539654,+	p1@ENST00000430271
2.39e-66	FFCP PHASE2:Hg19::chr10:101691056..101691064,-	p13@DNMBP
2.39e-66	FFCP PHASE2:Hg19::chr20:2779140..2779150,-	p9@CPXM1
2.39e-66	FFCP PHASE1:Hg19::chr7:63539651..63539654,+	p1@ENST00000430271
2.39e-66	FFCP PHASE1:Hg19::chr20:2779199..2779205,-	p13@CPXM1
2.39e-66	FFCP PHASE1:Hg19::chr16:11118533..11118538,+	p12@CLEC16A
2.39e-66	FFCP PHASE1:Hg19::chr10:101690855..101690861,-	p14@DNMBP
2.39e-66	FFCP PHASE2:Hg19::chr20:2779199..2779205,-	p13@CPXM1
2.39e-66	FFCP PHASE1:Hg19::chr20:2779236..2779242,-	p12@CPXM1
2.39e-66	FFCP PHASE1:Hg19::chrX:48056224..48056233,-	p1@SSX5
2.39e-66	FFCP PHASE1:Hg19::chr10:101691056..101691064,-	p13@DNMBP
2.39e-66	FFCP PHASE2:Hg19::chrX:48056224..48056233,-	p1@SSX5
2.39e-66	FFCP PHASE2:Hg19::chr20:2779236..2779242,-	p12@CPXM1
2.39e-66	FFCP PHASE2:Hg19::chr17:63511856..63511858,-	p@chr17:63511856..63511858, -
2.39e-66	FFCP PHASE2:Hg19::chr17:13574618..13574636,-	p@chr17:13574618..13574636, -
2.39e-66	FFCP PHASE1:Hg19::chr17:63511856..63511858,-	p@chr17:63511856..63511858, -
2.39e-66	FFCP PHASE1:Hg19::chr20:2779313..2779314,-	p16@CPXM1
2.39e-66	FFCP PHASE1:Hg19::chr17:13574618..13574636,-	p@chr17:13574618..13574636, -
1.53e-44	FFCP PHASE2:Hg19::chr2:191696381..191696384,-	p@chr2:191696381..191696384, -
1.53e-44	FFCP PHASE1:Hg19::chr2:191696381..191696384,-	p@chr2:191696381..191696384, -
4.27e-34	FFCP PHASE1:Hg19::chr9:140350189..140350212,-	p30@NELF
4.27e-34	FFCP PHASE1:Hg19::chr11:104005546..104005596,-	p@chr11:104005546..104005596, -
4.27e-34	FFCP PHASE2:Hg19::chr9:140350189..140350212,-	p30@NELF
4.27e-34	FFCP PHASE2:Hg19::chr10:101691199..101691208,-	p11@DNMBP
4.27e-34	FFCP PHASE1:Hg19::chr10:101691101..101691115,-	p7@DNMBP
4.27e-34	FFCP PHASE2:Hg19::chr8:122157279..122157284,-	p@chr8:122157279..122157284, -
4.27e-34	FFCP PHASE1:Hg19::chr4:169956294..169956301,-	p@chr4:169956294..169956301, -
4.27e-34	FFCP PHASE1:Hg19::chr8:122157279..122157284,-	p@chr8:122157279..122157284, -
4.27e-34	FFCP PHASE1:Hg19::chr11:41809203..41809208,-	p@chr11:41809203..41809208, -
4.27e-34	FFCP PHASE1:Hg19::chr11:106266838..106266843,+	p@chr11:106266838..106266843, +
4.27e-34	FFCP PHASE2:Hg19::chr4:169956294..169956301,-	p@chr4:169956294..169956301, -
4.27e-34	FFCP PHASE1:Hg19::chrX:147062891..147062896,+	p3@FMR1NB
4.27e-34	FFCP PHASE2:Hg19::chrX:147062891..147062896,+	p3@FMR1NB
4.27e-34	FFCP PHASE2:Hg19::chr8:94870047..94870056,+	p30@PDP1
4.27e-34	FFCP PHASE1:Hg19::chr10:101691199..101691208,-	p11@DNMBP
4.27e-34	FFCP PHASE1:Hg19::chr8:94870047..94870056,+	p30@PDP1
4.27e-34	FFCP PHASE2:Hg19::chr11:104005546..104005596,-	p@chr11:104005546..104005596, -
4.27e-34	FFCP PHASE2:Hg19::chr10:101691101..101691115,-	p7@DNMBP
4.27e-34	FFCP PHASE2:Hg19::chr9:103785643..103785646,-	p@chr9:103785643..103785646, -
4.27e-34	FFCP PHASE1:Hg19::chr9:103785643..103785646,-	p@chr9:103785643..103785646, -
4.27e-34	FFCP PHASE2:Hg19::chr11:41809203..41809208,-	p@chr11:41809203..41809208, -
4.27e-34	FFCP PHASE2:Hg19::chr11:106266838..106266843,+	p@chr11:106266838..106266843, +
5.96e-34	FFCP PHASE2:Hg19::chr17:63533845..63533851,-	p@chr17:63533845..63533851, -
5.96e-34	FFCP PHASE1:Hg19::chr2:118846114..118846125,+	p6@INSIG2
5.96e-34	FFCP PHASE1:Hg19::chr6:45405393..45405412,+	p@chr6:45405393..45405412, +
5.96e-34	FFCP PHASE1:Hg19::chr17:63533845..63533851,-	p@chr17:63533845..63533851, -
5.96e-34	FFCP PHASE2:Hg19::chr2:118846114..118846125,+	p6@INSIG2
5.96e-34	FFCP PHASE2:Hg19::chr6:45405393..45405412,+	p@chr6:45405393..45405412, +
5.96e-34	FFCP PHASE1:Hg19::chr6:45399533..45399540,+	p@chr6:45399533..45399540, +
5.96e-34	FFCP PHASE2:Hg19::chr3:139035972..139036016,-	p@chr3:139035972..139036016, -
5.96e-34	FFCP PHASE1:Hg19::chr3:139035972..139036016,-	p@chr3:139035972..139036016, -
5.96e-34	FFCP PHASE2:Hg19::chr6:45399533..45399540,+	p@chr6:45399533..45399540, +
5.96e-34	FFCP PHASE1:Hg19::chr6:45399245..45399258,+	p@chr6:45399245..45399258, +
5.96e-34	FFCP PHASE1:Hg19::chr20:2795718..2795731,+	p5@C20orf141
5.96e-34	FFCP PHASE2:Hg19::chr6:45399245..45399258,+	p@chr6:45399245..45399258, +
5.96e-34	FFCP PHASE2:Hg19::chr20:2795718..2795731,+	p5@C20orf141
5.96e-34	FFCP PHASE1:Hg19::chr6:46985426..46985427,-	p@chr6:46985426..46985427, -
5.96e-34	FFCP PHASE1:Hg19::chr4:171012844..171012850,-	p12@AADAT
5.96e-34	FFCP PHASE1:Hg19::chr6:45399263..45399274,+	p@chr6:45399263..45399274, +
5.96e-34	FFCP PHASE1:Hg19::chr6:169691363..169691375,-	p@chr6:169691363..169691375, -
5.96e-34	FFCP PHASE2:Hg19::chr15:55806847..55806854,-	p@chr15:55806847..55806854, -
5.96e-34	FFCP PHASE1:Hg19::chr9:140349856..140349859,-	p36@NELF
5.96e-34	FFCP PHASE2:Hg19::chr6:46985426..46985427,-	p@chr6:46985426..46985427, -
5.96e-34	FFCP PHASE2:Hg19::chr4:171012844..171012850,-	p12@AADAT
5.96e-34	FFCP PHASE2:Hg19::chr6:45399263..45399274,+	p@chr6:45399263..45399274, +
5.96e-34	FFCP PHASE2:Hg19::chr12:65386452..65386492,-	p@chr12:65386452..65386492, -
5.96e-34	FFCP PHASE2:Hg19::chr6:169691363..169691375,-	p@chr6:169691363..169691375, -
5.96e-34	FFCP PHASE1:Hg19::chr6:141743015..141743025,+	p@chr6:141743015..141743025, +
5.96e-34	FFCP PHASE2:Hg19::chr9:140349856..140349859,-	p36@NELF
5.96e-34	FFCP PHASE1:Hg19::chr6:45399294..45399301,+	p@chr6:45399294..45399301, +
5.96e-34	FFCP PHASE2:Hg19::chr6:141743015..141743025,+	p@chr6:141743015..141743025, +
5.96e-34	FFCP PHASE1:Hg19::chr9:140349915..140349924,-	p34@NELF
5.96e-34	FFCP PHASE1:Hg19::chr1:93054640..93054674,-	p@chr1:93054640..93054674, -
5.96e-34	FFCP PHASE1:Hg19::chr6:45405332..45405343,+	p@chr6:45405332..45405343, +
5.96e-34	FFCP PHASE1:Hg19::chr15:55806847..55806854,-	p@chr15:55806847..55806854, -
5.96e-34	FFCP PHASE2:Hg19::chr6:45399294..45399301,+	p@chr6:45399294..45399301, +
5.96e-34	FFCP PHASE1:Hg19::chr1:119837700..119837705,+	p@chr1:119837700..119837705, +
5.96e-34	FFCP PHASE2:Hg19::chr9:140349915..140349924,-	p34@NELF
5.96e-34	FFCP PHASE2:Hg19::chr1:93054640..93054674,-	p@chr1:93054640..93054674, -
5.96e-34	FFCP PHASE2:Hg19::chr6:45405332..45405343,+	p@chr6:45405332..45405343, +
5.96e-34	FFCP PHASE1:Hg19::chr12:65386452..65386492,-	p@chr12:65386452..65386492, -
5.96e-34	FFCP PHASE2:Hg19::chr1:119837700..119837705,+	p@chr1:119837700..119837705, +
1.71e-30	FFCP PHASE2:Hg19::chr2:75751179..75751194,+	p1@BC018659
1.71e-30	FFCP PHASE1:Hg19::chr2:75751179..75751194,+	p1@BC018659
1.59e-27	FFCP PHASE1:Hg19::chr14:29047235..29047244,+	p@chr14:29047235..29047244, +
1.59e-27	FFCP PHASE2:Hg19::chr14:29047235..29047244,+	p@chr14:29047235..29047244, +
3.56e-27	FFCP PHASE2:Hg19::chr17:171082..171101,+	p@chr17:171082..171101, +
3.56e-27	FFCP PHASE1:Hg19::chr17:171082..171101,+	p@chr17:171082..171101, +
7.93e-25	FFCP PHASE1:Hg19::chr7:27163592..27163605,-	p@chr7:27163592..27163605, -
7.93e-25	FFCP PHASE2:Hg19::chr7:27163592..27163605,-	p@chr7:27163592..27163605, -

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