Personal tools

CL:0000809

From FANTOM5_SSTAR

Jump to: navigation, search
Name:double-positive, alpha-beta thymocyte
Namespace:FANTOM
Definition:"A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "double-positive, alpha-beta immature T lymphocyte" EXACT []
"DP cell" EXACT []
"DP thymocyte" EXACT []
Comments:Thymocytes of this stage are undergoing positive and negative selection.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000790(immature alpha-beta T cell),CL:0000893(thymocyte)
develops_from:CL:0000805(immature single positive thymocyte)
part_of:UBERON:0002370(thymus)



Children


is a:CL:0002427 (resting double-positive thymocyte),CL:0002428 (double-positive blast),CL:0002429 (CD69-positive double-positive thymocyte),CL:0002431 (CD4-positive, CD8-intermediate double-positive thymocyte)
develops from:CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000914 (immature NK T cell),CL:0002039 (immature NK T cell stage I)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000809 (double-positive, alpha-beta thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data