CL:0002539
From FANTOM5_SSTAR
Name: | aortic smooth muscle cell | |
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Namespace: | FANTOM | |
Definition: | "A smooth muscle cell of the aorta." [GOC:tfm] | |
Xrefs: |
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Created by: | tmeehan | |
Creation date: | 2011-02-28T01:42:12Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000359(vascular associated smooth muscle cell) |
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part_of: | UBERON:0004178(aorta smooth muscle tissue) |
Children
is a: | FF:0000017 (canine aortic smooth muscle cell),FF:0000033 (chicken aortic smooth muscle cell),FF:0000148 (rat aortic smooth muscle cell) |
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derives from: | FF:0000104 (mouse aortic smooth muscle cell sample),FF:0000168 (human aortic smooth muscle cell sample),FF:0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample),FF:0000547 (human Aortic Smooth Muscle cells 15min after treatment with FGF2 sample),FF:0000548 (human Aortic Smooth Muscle cells 30min after treatment with FGF2 sample),FF:0000549 (human Aortic Smooth Muscle cells 45min after treatment with FGF2 sample),FF:0000550 (human Aortic Smooth Muscle cells 1hr after treatment with FGF2 sample),FF:0000551 (human Aortic Smooth Muscle cells 2hr after treatment with FGF2 sample),FF:0000552 (human Aortic Smooth Muscle cells 3hr after treatment with FGF2 sample),FF:0000553 (human Aortic Smooth Muscle cells 4hr after treatment with FGF2 sample),FF:0000554 (human Aortic Smooth Muscle cells 5hr after treatment with FGF2 sample),FF:0000555 (human Aortic Smooth Muscle cells 6hr after treatment with FGF2 sample),FF:0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample),FF:0000557 (human Aortic Smooth Muscle cells 15min after treatment with IL1b sample),FF:0000558 (human Aortic Smooth Muscle cells 30min after treatment with IL1b sample),FF:0000559 (human Aortic Smooth Muscle cells 45min after treatment with IL1b sample),FF:0000560 (human Aortic Smooth Muscle cells 1hr after treatment with IL1b sample),FF:0000561 (human Aortic Smooth Muscle cells 2hr after treatment with IL1b sample),FF:0000562 (human Aortic Smooth Muscle cells 3hr after treatment with IL1b sample),FF:0000563 (human Aortic Smooth Muscle cells 4hr after treatment with IL1b sample),FF:0000564 (human Aortic Smooth Muscle cells 5hr after treatment with IL1b sample),FF:0000565 (human Aortic Smooth Muscle cells 6hr after treatment with IL1b sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002539 (aortic smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data