Personal tools

CL:0002539

From FANTOM5_SSTAR

Jump to: navigation, search
Name:aortic smooth muscle cell
Namespace:FANTOM
Definition:"A smooth muscle cell of the aorta." [GOC:tfm]
Xrefs:
links:
BTO:0004577
Created by:tmeehan
Creation date:2011-02-28T01:42:12Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0004178(aorta smooth muscle tissue)



Children


is a:FF:0000017 (canine aortic smooth muscle cell),FF:0000033 (chicken aortic smooth muscle cell),FF:0000148 (rat aortic smooth muscle cell)
derives from:FF:0000104 (mouse aortic smooth muscle cell sample),FF:0000168 (human aortic smooth muscle cell sample),FF:0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample),FF:0000547 (human Aortic Smooth Muscle cells 15min after treatment with FGF2 sample),FF:0000548 (human Aortic Smooth Muscle cells 30min after treatment with FGF2 sample),FF:0000549 (human Aortic Smooth Muscle cells 45min after treatment with FGF2 sample),FF:0000550 (human Aortic Smooth Muscle cells 1hr after treatment with FGF2 sample),FF:0000551 (human Aortic Smooth Muscle cells 2hr after treatment with FGF2 sample),FF:0000552 (human Aortic Smooth Muscle cells 3hr after treatment with FGF2 sample),FF:0000553 (human Aortic Smooth Muscle cells 4hr after treatment with FGF2 sample),FF:0000554 (human Aortic Smooth Muscle cells 5hr after treatment with FGF2 sample),FF:0000555 (human Aortic Smooth Muscle cells 6hr after treatment with FGF2 sample),FF:0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample),FF:0000557 (human Aortic Smooth Muscle cells 15min after treatment with IL1b sample),FF:0000558 (human Aortic Smooth Muscle cells 30min after treatment with IL1b sample),FF:0000559 (human Aortic Smooth Muscle cells 45min after treatment with IL1b sample),FF:0000560 (human Aortic Smooth Muscle cells 1hr after treatment with IL1b sample),FF:0000561 (human Aortic Smooth Muscle cells 2hr after treatment with IL1b sample),FF:0000562 (human Aortic Smooth Muscle cells 3hr after treatment with IL1b sample),FF:0000563 (human Aortic Smooth Muscle cells 4hr after treatment with IL1b sample),FF:0000564 (human Aortic Smooth Muscle cells 5hr after treatment with IL1b sample),FF:0000565 (human Aortic Smooth Muscle cells 6hr after treatment with IL1b sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002539 (aortic smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data