DOID:0060084

Name:	cell type benign neoplasm
Namespace:	FANTOM
Definition:	"A benign neoplasm that is classified by the type of cell or tissue from which it is derived." [url:http://en.wikipedia.org/wiki/Benign_tumor]
Created by:	lschriml
Creation date:	2011-07-14T11:59:48Z

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	DOID:0060072(benign neoplasm)

Children

is a:	DOID:127 (leiomyoma),DOID:255 (hemangioma),DOID:2615 (papilloma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

• 10559-108A1
• 10569-108B2 (leiomyoma cell line:10964C)
• 10570-108B3 (leiomyoma cell line:15242A)
• 10571-108B4 (leiomyoma cell line:15425)
• 10572-108B5
• 10724-110A4
• 10738-110B9
• 10751-110D4

Mouse (Mus musculus)

• 10559-108A1
• 10569-108B2 (leiomyoma cell line:10964C)
• 10570-108B3 (leiomyoma cell line:15242A)
• 10571-108B4 (leiomyoma cell line:15425)
• 10572-108B5
• 10724-110A4
• 10738-110B9
• 10751-110D4

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060084 (cell type benign neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
5.41e-147	FFCP PHASE1:Hg19::chr3:132975986..132975997,-	p1@uc003epl.2
5.41e-147	FFCP PHASE2:Hg19::chr3:132975986..132975997,-	p1@uc003epl.2
8.98e-131	FFCP PHASE2:Hg19::chr1:152842532..152842539,+	p@chr1:152842532..152842539, +
8.98e-131	FFCP PHASE2:Hg19::chr1:152842546..152842554,+	p@chr1:152842546..152842554, +
8.98e-131	FFCP PHASE1:Hg19::chr1:152842532..152842539,+	p@chr1:152842532..152842539, +
8.98e-131	FFCP PHASE1:Hg19::chr1:152842546..152842554,+	p@chr1:152842546..152842554, +
2.33e-118	FFCP PHASE1:Hg19::chr3:132976005..132976010,-	p2@ENST00000505721
2.33e-118	FFCP PHASE2:Hg19::chr3:132976005..132976010,-	p2@ENST00000505721
3.48e-118	FFCP PHASE2:Hg19::chr2:218192886..218192899,-	p@chr2:218192886..218192899, -
3.48e-118	FFCP PHASE1:Hg19::chr2:218192886..218192899,-	p@chr2:218192886..218192899, -
5.41e-85	FFCP PHASE1:Hg19::chr8:42037558..42037573,-	p@chr8:42037558..42037573, -
5.41e-85	FFCP PHASE2:Hg19::chr8:42037558..42037573,-	p@chr8:42037558..42037573, -
1.28e-84	FFCP PHASE1:Hg19::chr3:141150971..141150978,+	p60@ZBTB38
1.28e-84	FFCP PHASE2:Hg19::chr3:141150971..141150978,+	p60@ZBTB38
2.39e-66	FFCP PHASE2:Hg19::chr2:218192853..218192858,-	p@chr2:218192853..218192858, -
2.39e-66	FFCP PHASE1:Hg19::chr2:218192853..218192858,-	p@chr2:218192853..218192858, -
4.68e-66	FFCP PHASE1:Hg19::chr1:163045452..163045464,+	p@chr1:163045452..163045464, +
4.68e-66	FFCP PHASE2:Hg19::chr1:163045452..163045464,+	p@chr1:163045452..163045464, +
2.43e-60	FFCP PHASE2:Hg19::chr22:44708774..44708788,-	p3@KIAA1644
2.43e-60	FFCP PHASE1:Hg19::chr22:44708774..44708788,-	p3@KIAA1644
4.17e-55	FFCP PHASE2:Hg19::chr2:207406777..207406786,+	p9@ADAM23
4.17e-55	FFCP PHASE1:Hg19::chr2:207406777..207406786,+	p9@ADAM23
1.41e-46	FFCP PHASE2:Hg19::chr8:42040287..42040298,-	p10@PLAT
1.41e-46	FFCP PHASE1:Hg19::chr8:42040287..42040298,-	p10@PLAT
9.77e-45	FFCP PHASE2:Hg19::chr7:12134329..12134354,-	p@chr7:12134329..12134354, -
9.77e-45	FFCP PHASE1:Hg19::chr7:12134329..12134354,-	p@chr7:12134329..12134354, -
9.77e-45	FFCP PHASE2:Hg19::chr2:218193183..218193196,-	p@chr2:218193183..218193196, -
9.77e-45	FFCP PHASE1:Hg19::chr2:218193183..218193196,-	p@chr2:218193183..218193196, -
6.94e-44	FFCP PHASE1:Hg19::chr6:86200265..86200276,+	p@chr6:86200265..86200276, +
6.94e-44	FFCP PHASE2:Hg19::chr6:86200265..86200276,+	p@chr6:86200265..86200276, +
1.23e-38	FFCP PHASE2:Hg19::chrX:7077952..7077959,+	p18@STS
1.23e-38	FFCP PHASE1:Hg19::chrX:7077952..7077959,+	p18@STS
1.85e-36	FFCP PHASE2:Hg19::chr6:86204236..86204247,+	p@chr6:86204236..86204247, +
1.85e-36	FFCP PHASE1:Hg19::chr6:86204236..86204247,+	p@chr6:86204236..86204247, +
2.98e-36	FFCP PHASE2:Hg19::chr1:198203826..198203841,+	p@chr1:198203826..198203841, +
2.98e-36	FFCP PHASE1:Hg19::chr1:198203826..198203841,+	p@chr1:198203826..198203841, +
4.66e-34	FFCP PHASE2:Hg19::chr13:32313685..32313699,+	p2@RXFP2
4.66e-34	FFCP PHASE1:Hg19::chr13:32313685..32313699,+	p2@RXFP2
5.96e-34	FFCP PHASE1:Hg19::chr1:46379338..46379343,+	p13@MAST2
5.96e-34	FFCP PHASE1:Hg19::chr4:187518318..187518321,-	p53@FAT1
5.96e-34	FFCP PHASE2:Hg19::chr3:132975822..132975848,-	p@chr3:132975822..132975848, -
5.96e-34	FFCP PHASE2:Hg19::chr7:12134356..12134370,-	p@chr7:12134356..12134370, -
5.96e-34	FFCP PHASE2:Hg19::chr3:132975886..132975894,-	p1@ENST00000504993
5.96e-34	FFCP PHASE2:Hg19::chr11:102712977..102712984,-	p@chr11:102712977..102712984, -
5.96e-34	FFCP PHASE2:Hg19::chr6:130763941..130763951,+	p@chr6:130763941..130763951, +
5.96e-34	FFCP PHASE1:Hg19::chr3:132975822..132975848,-	p@chr3:132975822..132975848, -
5.96e-34	FFCP PHASE1:Hg19::chr7:12134356..12134370,-	p@chr7:12134356..12134370, -
5.96e-34	FFCP PHASE1:Hg19::chr3:132975886..132975894,-	p1@ENST00000504993
5.96e-34	FFCP PHASE1:Hg19::chr11:102712977..102712984,-	p@chr11:102712977..102712984, -
5.96e-34	FFCP PHASE2:Hg19::chr1:46379338..46379343,+	p13@MAST2
5.96e-34	FFCP PHASE1:Hg19::chr6:130763941..130763951,+	p@chr6:130763941..130763951, +
5.96e-34	FFCP PHASE2:Hg19::chr4:187518318..187518321,-	p53@FAT1
9.1e-34	FFCP PHASE2:Hg19::chr13:32313658..32313668,+	p3@RXFP2
9.1e-34	FFCP PHASE1:Hg19::chr13:32313658..32313668,+	p3@RXFP2
8.26e-33	FFCP PHASE2:Hg19::chr21:30000326..30000330,+	p@chr21:30000326..30000330, +
8.26e-33	FFCP PHASE1:Hg19::chr21:30000326..30000330,+	p@chr21:30000326..30000330, +
2.41e-32	FFCP PHASE2:Hg19::chr6:130761678..130761702,+	p1@AB385516
2.41e-32	FFCP PHASE1:Hg19::chr6:130761678..130761702,+	p1@AB385516
1.3e-31	FFCP PHASE2:Hg19::chr8:42042654..42042665,-	p9@PLAT
1.3e-31	FFCP PHASE1:Hg19::chr8:42042654..42042665,-	p9@PLAT
7.37e-31	FFCP PHASE1:Hg19::chr2:220326139..220326158,+	p10@SPEG
7.37e-31	FFCP PHASE2:Hg19::chr2:220326139..220326158,+	p10@SPEG
1.0e-30	FFCP PHASE1:Hg19::chr7:27219651..27219660,-	p4@ENST00000470747
1.0e-30	FFCP PHASE2:Hg19::chr7:27219651..27219660,-	p4@ENST00000470747
1.71e-30	FFCP PHASE1:Hg19::chr8:42033253..42033264,-	p@chr8:42033253..42033264, -
1.71e-30	FFCP PHASE2:Hg19::chr8:42033253..42033264,-	p@chr8:42033253..42033264, -
1.98e-30	FFCP PHASE2:Hg19::chr3:141151044..141151053,+	p51@ZBTB38
1.98e-30	FFCP PHASE1:Hg19::chr3:141151044..141151053,+	p51@ZBTB38
3.59e-30	FFCP PHASE1:Hg19::chr10:90974443..90974454,-	p@chr10:90974443..90974454, -
3.59e-30	FFCP PHASE2:Hg19::chr10:90974443..90974454,-	p@chr10:90974443..90974454, -
8.26e-30	FFCP PHASE2:Hg19::chr7:84349931..84349955,-	p@chr7:84349931..84349955, -
8.26e-30	FFCP PHASE1:Hg19::chr7:84349931..84349955,-	p@chr7:84349931..84349955, -
1.8e-29	FFCP PHASE2:Hg19::chr9:106854088..106854104,-	p@chr9:106854088..106854104, -
1.8e-29	FFCP PHASE1:Hg19::chr9:106854088..106854104,-	p@chr9:106854088..106854104, -
6.14e-29	FFCP PHASE1:Hg19::chr3:98518094..98518105,-	p39@DCBLD2
6.14e-29	FFCP PHASE2:Hg19::chr3:98518094..98518105,-	p39@DCBLD2
6.28e-29	FFCP PHASE2:Hg19::chr10:90988088..90988122,-	p@chr10:90988088..90988122, -
6.28e-29	FFCP PHASE1:Hg19::chr10:90988088..90988122,-	p@chr10:90988088..90988122, -
6.84e-28	FFCP PHASE2:Hg19::chr1:219615990..219616001,-	p1@ENST00000420762
6.84e-28	FFCP PHASE1:Hg19::chr1:219615990..219616001,-	p1@ENST00000420762
8.12e-28	FFCP PHASE1:Hg19::chr4:6279204..6279216,+	p6@WFS1
8.12e-28	FFCP PHASE2:Hg19::chr4:6279204..6279216,+	p6@WFS1
9.35e-28	FFCP PHASE1:Hg19::chr8:42045498..42045512,-	p6@PLAT
9.35e-28	FFCP PHASE2:Hg19::chr8:42045498..42045512,-	p6@PLAT
1.06e-27	FFCP PHASE2:Hg19::chr6:17281802..17281817,+	p13@RBM24
1.06e-27	FFCP PHASE1:Hg19::chr3:151871166..151871172,+	p@chr3:151871166..151871172, +
1.06e-27	FFCP PHASE1:Hg19::chr6:17281802..17281817,+	p13@RBM24
1.06e-27	FFCP PHASE2:Hg19::chr3:151871166..151871172,+	p@chr3:151871166..151871172, +
1.82e-27	FFCP PHASE2:Hg19::chr3:69811826..69811835,+	p16@MITF
1.82e-27	FFCP PHASE1:Hg19::chr3:69811826..69811835,+	p16@MITF
2.72e-27	FFCP PHASE2:Hg19::chr7:129962463..129962477,+	p@chr7:129962463..129962477, +
2.72e-27	FFCP PHASE1:Hg19::chr7:129962463..129962477,+	p@chr7:129962463..129962477, +
2.98e-27	FFCP PHASE1:Hg19::chr1:163042618..163042628,+	p@chr1:163042618..163042628, +
2.98e-27	FFCP PHASE2:Hg19::chr1:163042618..163042628,+	p@chr1:163042618..163042628, +
3.26e-27	FFCP PHASE2:Hg19::chr12:75875762..75875778,+	p@chr12:75875762..75875778, +
3.26e-27	FFCP PHASE1:Hg19::chr12:75875762..75875778,+	p@chr12:75875762..75875778, +
4.65e-27	FFCP PHASE2:Hg19::chr14:76447469..76447487,-	p12@TGFB3
4.65e-27	FFCP PHASE1:Hg19::chr14:76447469..76447487,-	p12@TGFB3
5.31e-27	FFCP PHASE2:Hg19::chr10:90975757..90975768,-	p@chr10:90975757..90975768, -
5.31e-27	FFCP PHASE1:Hg19::chr10:90975757..90975768,-	p@chr10:90975757..90975768, -

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