EntrezGene:20425

Symbol:	Shmt1
Description:	serine hydroxymethyltransferase 1 (soluble)
Synonyms:	AI324848, AI385541, C81125, Shmt, mshmt, mshmt1, mshmt2
Species:	Mouse (Mus musculus)
Xrefs:	ExpandEntrezGene:20425 MGI:98299 Ensembl:ENSMUSG00000020534 Vega:OTTMUSG00000007760
Associated motifs:	NA
Transcripton Factor?:	No

TSS regions

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Mm9::chr11:60624526..60624529,-	p4@Shmt1
Mm9::chr11:60624607..60624712,-	p1@Shmt1
Mm9::chr11:60624730..60624743,-	p2@Shmt1
Mm9::chr11:60624757..60624772,-	p5@Shmt1
TSS peak ID	Short_description

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TSS expression

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Sample	p1@Shmt1	p2@Shmt1	p4@Shmt1	p5@Shmt1

Sample	p1@Shmt1	p2@Shmt1	p4@Shmt1	p5@Shmt1
Mouse hepatocyte, donor3.CNhs12615.11637-122C8	174.32	21.59	7.56	0.00
liver, adult pregnant day01.CNhs10466.508-5B2	155.04	11.27	10.38	0.00
liver, neonate N30.CNhs11106.1382-42D1	135.08	11.10	6.27	0.00
liver, neonate N20.CNhs11220.823-25A3	134.62	18.94	5.81	0.00
liver, neonate N25.CNhs11198.1368-26H1	122.89	12.20	6.28	0.00
liver, neonate N10.CNhs11115.751-24B9	115.45	5.62	4.68	0.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F1	107.61	3.51	0.24	0.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E6	106.33	3.77	0.17	0.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F7	105.83	14.63	1.72	0.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F4	100.07	9.10	5.85	0.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F6	97.22	9.41	5.82	0.00
liver, neonate N03.CNhs11123.1345-25G2	91.98	11.53	4.94	0.00
liver, neonate N07.CNhs11103.716-20H2	82.24	6.33	3.35	0.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F6	68.16	10.64	1.00	0.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F5	67.01	11.27	2.60	0.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F7	65.95	10.82	1.02	0.00
kidney, neonate N30.CNhs11203.1385-42H1	58.61	3.46	1.36	0.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C4	58.48	5.44	13.60	0.00
adrenal gland, embryo E18.CNhs11026.1262-18F5	56.22	6.78	2.11	0.00
liver, neonate N06.CNhs11101.684-20A8	56.07	4.31	4.31	0.00
kidney, neonate N25.CNhs11122.1353-25F3	55.26	2.67	1.88	0.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A7	50.28	3.65	4.21	0.00
adrenal gland, embryo E17.CNhs11043.1263-45I1	50.04	5.77	2.08	0.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B6	46.93	3.77	2.74	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G6	44.90	3.69	0.00	0.00
liver, neonate N00.CNhs11117.641-24F4	44.10	2.76	1.30	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I3	43.82	2.54	0.00	0.00
adrenal gland, embryo E16.CNhs11004.1254-43D6	42.02	5.78	2.13	0.00
pancreas, embryo E15.CNhs11042.1556-45F2	39.91	2.42	0.30	0.00
adrenal gland, neonate N00.CNhs11191.1311-23C1	38.33	0.82	0.94	0.00
liver, embryo E17.CNhs10510.481-18A3	37.43	4.33	2.55	0.00
intestine, embryo E16.CNhs10585.463-22H4	37.31	3.83	0.40	0.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E7	37.03	0.56	0.14	0.00
liver, embryo E16.CNhs10523.462-17F5	36.42	2.17	0.72	0.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F2	34.64	0.47	0.00	0.00
thymus, embryo E16.CNhs11002.456-26C5	33.91	2.08	0.00	0.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E9	31.70	0.00	0.00	0.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D4	30.75	0.51	0.38	0.00
forelimb, embryo E11.CNhs10596.335-25E2	30.61	2.80	0.22	0.00
intestine, embryo E15.CNhs10602.976-16D8	30.54	2.71	0.13	0.00
thymus, embryo E15.CNhs11005.430-45I2	30.20	2.47	0.21	0.00
testis, neonate N10.CNhs11204.763-44D9	29.99	2.41	0.63	0.00
intestine, embryo E17.CNhs10582.482-18D3	29.80	3.11	0.22	0.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D2	29.34	0.26	0.26	0.00
intestine, embryo E18.CNhs10526.1289-20F7	28.72	1.52	0.19	0.00
pancreas, embryo E14.CNhs11012.405-44F4	28.41	2.19	0.24	0.00
adrenal gland, embryo E14.CNhs11038.406-44C5	28.28	2.60	0.00	0.00
intestine, neonate N01.CNhs11192.1322-23E9	27.67	1.48	0.16	0.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F7	27.36	9.15	0.36	0.00
stomach, neonate N30.CNhs11134.1386-42I1	27.35	1.43	0.26	0.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H3	27.30	4.88	0.00	0.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C7	27.20	0.48	0.00	0.00
kidney, neonate N20.CNhs11113.832-19I1	27.16	2.07	0.59	0.00
testis, embryo E15.CNhs11034.443-27C5	27.14	1.99	0.17	0.00
thymus, embryo E17.CNhs10581.478-18C1	26.85	1.61	0.18	0.00
intestine, neonate N25.CNhs11121.1352-25E3	26.80	1.08	0.00	0.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D5	26.43	0.57	0.00	0.00
kidney, neonate N10.CNhs11206.758-6D5	26.05	1.45	0.25	0.00
thymus, embryo E14.CNhs11041.402-44I4	25.95	0.20	0.20	0.00
liver, embryo E18.CNhs10579.499-43G4	25.89	3.74	1.15	0.00
stomach, embryo E16.CNhs11022.459-17D4	25.81	1.62	0.00	0.00
thymus, embryo E18.CNhs10595.1273-19G4	25.63	2.98	0.00	0.00
kidney, embryo E15.CNhs10997.434-16F8	25.59	1.49	0.11	0.00
liver, embryo E12.CNhs10601.355-15F8	25.53	1.33	0.50	0.00
testis, neonate N07.CNhs11222.726-26I4	25.52	1.43	0.13	0.00
liver, embryo E15.CNhs10520.433-16D7	25.36	2.84	0.41	0.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G5	25.35	2.69	0.34	0.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C8	25.06	1.55	0.22	0.00
mammary gland, adult pregnant day19.CNhs10476.588-5H2	24.83	0.55	0.55	0.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H2	24.82	0.40	0.00	0.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I7	24.68	4.70	0.17	0.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D1	24.60	0.00	0.00	0.00
testis, embryo E18.CNhs11027.503-18G5	24.16	0.68	0.34	0.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I9	24.03	0.52	0.00	0.00
intestine, embryo E12.CNhs11019.1251-16I5	23.89	1.07	0.00	0.00
adrenal gland, neonate N25.CNhs11223.1377-27I3	23.88	1.26	0.38	0.00
intestine, embryo E13.CNhs11010.381-16D5	23.69	1.63	0.00	0.00
testis, embryo E13.CNhs11031.389-23F5	23.62	2.24	0.00	0.00
thymus, neonate N02.CNhs11181.1541-43F8	23.20	0.96	0.12	0.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C8	23.17	0.70	0.70	0.00
lung, embryo E12.CNhs10522.354-16G2	23.12	1.52	0.00	0.00
testis, embryo E17.CNhs11029.486-18I5	23.12	1.03	0.26	0.00
thymus, neonate N06.CNhs11197.681-26C4	22.82	1.31	0.00	0.00
skin, neonate N00.CNhs11124.650-25G4	22.77	0.32	0.48	0.00
lung, embryo E14.CNhs10604.404-26F8	22.65	1.14	0.00	0.00
intestine, neonate N06.CNhs11102.688-20B8	22.37	1.01	0.75	0.00
liver, embryo E14.CNhs10594.409-16E1	21.81	3.82	0.67	0.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D1	21.76	2.08	0.16	0.00
kidney, embryo E18.CNhs11001.1288-20C7	21.72	0.58	0.39	0.00
Ileum epithelium, pool2.CNhs13232.10253-104C1	21.67	1.51	0.00	0.00
stomach, embryo E12.CNhs10588.356-43E3	21.67	0.63	0.16	0.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D2	21.56	1.15	0.00	0.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I8	21.49	2.80	0.23	0.00
skin, neonate N06.CNhs11097.693-20I5	21.13	0.95	0.12	0.00
thymus, neonate N03.CNhs11137.2104-43C7	20.97	0.89	0.00	0.00
intestine, adult.CNhs10496.178-9A3	20.89	4.23	0.53	0.00
forelimb, embryo E12.CNhs10600.359-14H2	20.80	0.38	0.00	0.00
whole body, embryo E11.CNhs11014.324-5I8	20.76	1.56	0.10	0.00
intestine, neonate N30.CNhs11131.1384-42G1	20.71	1.00	0.20	0.00
vesicular gland, adult.CNhs10491.51-27F8	20.56	2.01	0.50	0.00
whole body, embryo E14.CNhs10519.395-14B1	20.54	2.31	0.00	0.00
stomach, embryo E18.CNhs10999.1286-20C6	20.53	0.66	0.44	0.00
stomach, neonate N07.CNhs11210.718-18A9	20.50	0.99	0.25	0.00
heart, embryo E17.CNhs11025.479-18E5	20.46	0.23	0.00	0.00
skin, neonate N03.CNhs11215.662-22H3	20.45	0.78	0.12	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G5	20.26	0.26	0.53	0.00
stomach, embryo E15.CNhs10603.1252-16G8	20.13	1.22	0.20	0.00
kidney, embryo E17.CNhs11028.483-18I2	19.96	1.02	0.20	0.00
thymus, neonate N07.CNhs11211.713-19D3	19.81	0.91	0.00	0.00
GP2+ M cell, pool3.CNhs13240.11847-124I2	19.61	2.37	0.65	0.00
stomach, embryo E17.CNhs11006.1035-18D5	19.45	1.05	0.00	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C9	19.31	0.00	0.00	0.00
aorta, adult.CNhs10498.46-23H1	19.23	0.29	0.43	0.00
heart, embryo E18.CNhs11030.1283-20G3	19.05	0.54	0.27	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C6	19.04	0.00	0.00	0.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D4	19.03	0.40	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G5	18.67	1.13	0.19	0.00
heart, embryo E12.CNhs11015.353-12F5	18.53	0.94	0.00	0.00
heart, embryo E11.CNhs10586.331-24E9	18.23	1.04	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G5	18.19	1.01	0.51	0.00
gonad, embryo E13.CNhs11044.1564-45I6	18.11	1.39	0.00	0.00
eyeball, embryo E12.CNhs11016.345-16C6	18.09	0.65	0.00	0.00
lung, embryo E15.CNhs11020.432-17C5	17.99	1.02	0.17	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G5	17.98	0.84	0.09	0.00
Ileum epithelium, pool1.CNhs13199.10252-104B9	17.86	0.95	0.19	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G5	17.86	0.92	0.46	0.00
heart, embryo E16.CNhs11021.457-17C6	17.59	0.62	0.15	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G5	17.59	0.44	0.15	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G5	17.49	0.00	0.00	0.00
kidney, neonate N00.CNhs11214.646-21G7	17.39	0.84	0.35	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G5	17.36	1.74	0.96	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G5	17.33	0.64	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G5	17.17	1.43	0.48	0.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D3	17.14	0.28	0.14	0.00
intestine, neonate N07.CNhs11095.720-20F2	17.11	0.99	0.20	0.00
intestine, neonate N00.CNhs11126.644-26D1	17.08	0.95	0.00	0.00
pancreas, neonate N16.CNhs11136.787-43B6	17.07	0.32	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G5	16.98	0.54	0.27	0.00
testis, adult.CNhs10504.57-7G5	16.91	0.56	1.13	0.00
testis, neonate N20.CNhs11110.839-18H3	16.91	1.21	0.72	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G5	16.85	0.95	0.59	0.00
whole body, embryo E18.CNhs10516.493-3B3	16.84	0.70	0.23	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G5	16.73	0.51	0.51	0.00
pancreas, neonate N01.CNhs11138.1531-43D7	16.72	0.36	0.00	0.00
thymus, neonate N10.CNhs11194.748-24E4	16.64	0.91	0.00	0.00
heart, embryo E14.CNhs10597.403-26D4	16.57	0.71	0.00	0.00
whole body, neonate N01.CNhs10576.659-23C6	16.45	0.57	0.38	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G5	16.26	1.15	0.32	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G5	16.25	0.85	0.25	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G5	16.25	1.58	0.49	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G5	16.22	0.44	0.22	0.00
kidney, embryo E14.CNhs10606.411-4I9	16.12	1.71	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G5	16.11	1.08	0.31	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G5	16.10	0.37	0.00	0.00
pancreas, neonate N02.CNhs11139.1539-43D8	16.04	0.00	0.00	0.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E2	16.01	0.78	0.00	0.00
testis, embryo E16.CNhs11033.470-26G5	15.94	0.39	0.39	0.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A3	15.90	0.85	0.60	0.00
heart, neonate N00.CNhs11213.639-21E3	15.76	0.23	0.35	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G5	15.75	1.03	0.59	0.00
forelimb, embryo E13.CNhs10589.384-1E2	15.66	0.18	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G5	15.66	1.24	0.41	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G5	15.62	1.13	0.38	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G5	15.55	0.41	0.82	0.00
submandibular gland, adult.CNhs10469.59-29C1	15.53	0.62	1.24	0.00
testis, neonate N00.CNhs11189.1300-22B7	15.49	0.59	0.23	0.00
colon, adult.CNhs10468.36-18H7	15.33	0.77	0.00	0.00
stomach, adult.CNhs10503.33-1H6	15.27	0.00	0.00	0.00
whole body, embryo E16.CNhs10514.453-14F2	15.26	2.02	0.37	0.00
small intestine, neonate N16.CNhs11114.790-21I1	15.16	2.33	0.00	0.00
liver, embryo E13.CNhs10524.378-3H6	15.14	0.98	0.20	0.00
whole body, embryo E17.5.CNhs10513.490-9F9	15.05	0.39	0.39	0.00
eyeball, embryo E14.CNhs10521.399-16E2	14.94	0.92	0.00	0.00
heart, embryo E13.CNhs11013.376-3I9	14.77	0.18	0.18	0.00
mammary gland, adult lactating day02.CNhs10480.595-22B6	14.75	0.00	0.00	0.00
kidney, embryo E16.CNhs10584.464-22A5	14.65	1.13	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G5	14.60	0.93	0.23	0.00
forelimb, embryo E15.CNhs11007.437-20E7	14.46	0.28	0.00	0.00
whole body, neonate N00.CNhs10525.657-19C2	14.40	0.00	0.43	0.00
intestine, neonate N20.CNhs11187.827-18D1	14.38	1.80	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G5	14.38	0.71	0.35	0.00
whole body, embryo E13.CNhs10512.372-23H2	14.34	0.85	0.34	0.00
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C7	14.26	0.16	0.00	0.00
whole body, neonate N06.CNhs10515.692-21D1	14.12	0.22	0.22	0.00
heart, embryo E15.CNhs11017.431-16C8	13.97	0.00	0.59	0.00
pancreas, embryo E16.CNhs11003.460-26E5	13.96	0.57	0.00	0.00
pituitary gland, embryo E12.CNhs11018.346-16E6	13.86	0.72	0.00	0.00
lung, embryo E16.CNhs10998.458-17B6	13.85	0.47	0.00	0.00
stomach, neonate N03.CNhs11193.1340-24B8	13.76	0.67	0.00	0.00
ovary, embryo E18.CNhs11040.505-44H7	13.53	0.36	0.18	0.00
heart, neonate N03.CNhs11221.1349-25I2	13.49	0.33	0.33	0.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E3	13.36	0.65	0.00	0.00
spleen, embryo E18.CNhs11011.1271-21F2	13.33	0.37	0.00	0.00
intestine, neonate N10.CNhs11098.755-23A5	13.26	0.78	0.19	0.00
eyeball, embryo E17.CNhs11023.1261-18D4	12.96	0.45	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G5	12.91	0.56	0.00	0.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D7	12.67	0.48	0.00	0.00
whole body, embryo E14.5.CNhs10578.420-27D2	12.40	0.97	0.00	0.00
testis, neonate N30.CNhs11130.1391-42E2	12.39	0.86	0.86	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G5	12.38	0.95	0.00	0.00
stomach, neonate N25.CNhs11104.1355-25E4	12.30	0.26	0.00	0.00
pituitary gland, embryo E13.CNhs11009.370-44C7	12.16	1.03	0.13	0.00
skin, neonate N10.CNhs11108.762-6C4	12.15	0.16	0.00	0.00
thymus, neonate N25.CNhs11125.1362-25G7	12.12	0.67	0.00	0.00
GP2+ M cell, pool2.CNhs13231.11846-124I1	12.06	2.15	0.00	0.00
whole body, embryo E12.CNhs10587.857-27C9	11.97	0.00	0.00	0.00
prostate, adult.CNhs10470.859-1F8	11.91	0.22	0.00	0.00
pituitary gland, embryo E14.CNhs11037.398-44A5	11.79	0.64	0.00	0.00
vagina, adult.CNhs10502.89-27D5	11.79	0.21	0.00	0.00
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F2	11.69	0.77	0.00	0.00
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G5	11.54	1.24	0.41	0.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D6	11.46	0.40	0.00	0.00
eyeball, neonate N00.CNhs11207.633-15C6	11.43	0.54	0.07	0.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E1	11.04	0.32	0.00	0.00
pancreas, neonate N00.CNhs11105.645-26G9	10.85	0.00	0.00	0.00
forelimb, embryo E17.CNhs10598.1517-43C4	10.80	0.35	0.00	0.00
ovary, neonate N00.CNhs11217.1299-22I4	10.59	0.00	0.00	0.00
forelimb, embryo E14.CNhs10577.413-26A8	10.52	0.66	0.22	0.00
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D2	10.41	0.61	0.00	0.00
eyeball, neonate N01.CNhs11140.1532-43E7	10.38	0.51	0.13	0.00
heart, neonate N10.CNhs11118.749-24G1	10.34	0.16	0.00	0.00
eyeball, embryo E15.CNhs10593.426-16C9	10.08	1.08	0.00	0.00
skin, adult.CNhs10492.30-1C3	10.06	0.49	0.00	0.00
lung, embryo E17.CNhs10605.480-44A6	10.05	0.17	0.00	0.00
whole body, neonate N10.CNhs10518.761-6B4	9.97	0.46	0.00	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G1	9.96	0.43	0.00	0.00
adrenal gland, adult.CNhs10508.49-24D7	9.95	0.59	0.30	0.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D5	9.85	0.31	0.00	0.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C2	9.85	0.00	0.25	0.00
thymus, neonate N20.CNhs11186.820-7A2	9.75	0.10	0.00	0.00
pancreas, embryo E17.CNhs10599.1558-45G3	9.74	0.00	0.00	0.00
bone (os femoris), neonate N02.CNhs11227.1985-43F5	9.54	0.00	0.16	0.00
uterus, adult.CNhs10509.92-27E5	9.52	0.37	0.00	0.00
forelimb, embryo E18.CNhs11008.1520-43B5	9.47	0.82	0.00	0.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D8	9.36	0.22	0.00	0.00
cecum, adult.CNhs10467.37-13H4	9.32	1.86	0.00	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G2	9.12	0.00	0.00	0.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G3	9.10	0.51	0.00	0.00
pancreas, embryo E18.CNhs10580.1535-43I7	8.92	0.92	0.00	0.00
placenta, adult pregnant day10.CNhs10472.539-13I7	8.92	0.23	0.00	0.00
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F5	8.78	0.54	0.00	0.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D5	8.77	0.29	0.00	0.00
spleen, embryo E16.CNhs11035.461-43C1	8.67	0.00	0.21	0.00
spleen, neonate N10.CNhs11116.752-24D1	8.66	0.38	0.19	0.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C2	8.50	0.44	0.00	0.00
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D6	8.27	0.00	0.00	0.00
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D9	7.99	0.00	0.00	0.00
spleen, neonate N25.CNhs11099.1354-25G3	7.78	0.00	0.00	0.00
eyeball, neonate N02.CNhs11205.1551-44G8	7.59	0.47	0.00	0.00
GP2+ M cell, pool1.CNhs13228.11845-124H9	7.47	0.57	0.00	0.00
pituitary gland, embryo E15.CNhs10592.427-16B9	7.45	0.35	0.00	0.00
ovary, adult.CNhs10507.91-2I7	7.24	0.28	0.00	0.00
pituitary gland, embryo E16.CNhs11036.449-43F6	7.13	0.00	0.18	0.00
heart, neonate N20.CNhs11127.821-26I6	7.02	0.00	0.15	0.00
whole body, embryo E17.CNhs10517.475-3I5	6.99	0.50	0.00	0.00
urinary bladder, adult.CNhs10481.879-12E4	6.95	0.19	0.00	0.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D9	6.79	0.00	0.00	0.00
thymus, neonate N30.CNhs11132.1393-42G2	6.78	0.12	0.00	0.00
bone (os femoris), neonate N16.CNhs11225.1525-43A6	6.63	0.00	0.00	0.00
accessory axillary lymph node, adult.CNhs10475.1063-29H9	6.47	0.26	0.00	0.00
lung, embryo E18.CNhs10583.1287-20I6	6.43	0.48	0.00	0.00
oviduct, adult pregnant day01.CNhs10500.988-6G6	6.43	0.00	0.00	0.00
tongue, adult.CNhs10499.32-1B4	6.35	0.00	0.00	0.00
bone (os femoris), adult.CNhs10483.56-12G2	6.19	0.88	0.00	0.00
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B1	6.11	0.20	0.20	0.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A1	6.05	0.00	0.00	0.00
thymus, adult.CNhs10471.38-12B5	6.00	0.32	0.00	0.00
Mouse Granule cells, donor3.CNhs12108.11636-122C7	5.70	0.00	0.00	0.00
eyeball, adult.CNhs10484.31-12G4	5.68	0.00	0.21	0.00
pituitary gland, neonate N00.CNhs11190.1308-22E9	5.48	0.30	0.30	0.00
lung, neonate N00.CNhs11224.640-42C6	5.46	0.20	0.39	0.00
heart, neonate N16.CNhs11209.782-15G1	5.35	0.08	0.00	0.00
bone (os femoris), neonate N20.CNhs11195.1350-25C3	5.33	0.48	0.00	0.00
pituitary gland, embryo E17.CNhs11039.1265-44F5	5.27	0.16	0.00	0.00
lung, neonate N20.CNhs11109.822-18A4	5.08	0.00	0.16	0.00
epididymis, adult.CNhs10490.58-23B2	5.05	0.00	0.25	0.00
hippocampus, neonate N00.CNhs11228.627-43G1	4.94	0.00	0.10	0.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I5	4.89	0.70	0.00	0.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D9	4.87	0.30	0.10	0.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C4	4.76	0.14	0.00	0.00
eyeball, neonate N16.CNhs11188.777-19A2	4.66	0.00	0.00	0.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E9	4.52	0.00	0.00	0.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A4	4.52	0.00	0.00	0.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D3	4.40	0.00	0.00	0.00
heart, neonate N30.CNhs11202.1390-42D2	4.29	0.00	0.00	0.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A6	4.24	0.85	0.00	0.00
lung, neonate N10.CNhs11219.750-23E6	4.15	0.16	0.00	0.00
pancreas, neonate N30.CNhs11182.1548-44H5	4.13	0.00	0.00	0.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I6	4.09	1.36	0.00	0.00
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G3	4.06	0.29	1.74	0.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A2	4.03	0.00	0.00	0.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A1	4.00	0.00	0.00	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E7	3.96	0.00	0.00	0.00
Mouse Schwann, donor2.CNhs12573.11746-123F9	3.78	0.15	0.00	0.00
spleen, adult.CNhs10465.25-2G2	3.76	0.17	0.00	0.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D5	3.75	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H3	3.66	0.00	0.00	0.00
Mouse Microglia, donor1.CNhs12629.11718-123C8	3.60	0.60	0.00	0.00
lung, neonate N06.CNhs11212.683-20E5	3.47	0.16	0.00	0.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E1	3.44	0.00	0.00	0.00
uterus, adult pregnant day19.CNhs10497.590-15F5	3.38	0.00	0.00	0.00
lung, neonate N30.CNhs11133.1394-42H2	3.33	0.00	0.00	0.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A2	3.31	0.16	0.00	0.00
heart, neonate N25.CNhs11196.1351-25D3	3.29	0.22	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E4	3.25	0.00	0.00	0.00
pancreas, neonate N25.CNhs11094.1555-45E2	3.16	0.00	0.00	0.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E8	3.06	0.00	0.09	0.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I4	3.01	0.00	0.50	0.00
lung, neonate N25.CNhs11119.1359-25C7	2.94	0.00	0.00	0.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D8	2.90	0.00	0.00	0.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C4	2.88	0.00	0.00	0.00
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A2	2.86	0.12	0.00	0.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A3	2.83	0.00	0.00	0.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A5	2.80	0.00	0.00	0.00
Mouse Schwann, donor1.CNhs12507.11728-123D9	2.80	0.15	0.08	0.00
corpus striatum, neonate N00.CNhs11226.630-43F1	2.76	0.00	0.00	0.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B3	2.75	0.00	0.00	0.00
corpus striatum, adult.CNhs10487.19-21D8	2.75	0.00	0.00	0.00
pancreas, adult.CNhs10486.34-16E4	2.65	0.00	0.00	0.00
placenta, adult pregnant day17.CNhs10464.577-18G3	2.54	0.00	0.21	0.00
lung, neonate N07.CNhs11111.715-19A3	2.44	0.22	0.00	0.00
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D6	2.36	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H1	2.34	0.00	0.00	0.00
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I6	2.29	0.00	0.00	0.00
spleen, neonate N20.CNhs11112.824-19H1	2.19	0.00	0.14	0.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I9	2.18	0.00	0.00	0.00
hippocampus, adult.CNhs10478.13-16E8	2.10	0.00	0.00	0.00
lung, adult.CNhs10474.28-22B1	2.03	0.37	0.00	0.00
Mouse Granule cells, donor1.CNhs12131.11713-123C3	2.02	0.20	0.00	0.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F6	1.99	0.00	0.00	0.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G6	1.83	0.00	0.00	0.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C1	1.80	0.00	0.00	0.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D1	1.78	0.00	0.00	0.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C6	1.69	0.68	0.00	0.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E5	1.69	0.00	0.00	0.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F3	1.66	0.00	0.26	0.00
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D4	1.58	0.00	0.00	0.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B7	1.56	0.00	0.00	0.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B8	1.54	0.00	0.00	0.00
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E1	1.49	0.19	0.00	0.00
cerebellum, adult.CNhs10494.15-8B2	1.46	0.00	0.00	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D2	1.42	0.00	0.00	0.00
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A4	1.37	0.00	0.00	0.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C7	1.35	0.00	0.00	0.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A6	1.35	0.00	0.00	0.00
intestinal mucosa, adult.CNhs10506.860-29I3	1.32	0.00	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E3	1.30	0.52	0.00	0.00
cortex, neonate N30.CNhs11107.1392-42F2	1.28	0.00	0.00	0.00
amnion, adult pregnant day17.5.CNhs10488.583-22A8	1.24	0.00	0.49	0.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I3	1.21	0.30	0.00	0.00
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F4	1.19	0.09	0.00	0.00
medulla oblongata, neonate N30.CNhs11200.1396-42A3	1.17	0.12	0.00	0.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A1	1.09	0.00	0.00	0.00
Mouse Granule cells, donor2.CNhs12357.11731-123E3	1.06	0.00	0.00	0.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C5	1.03	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H4	0.97	0.00	0.00	0.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C3	0.97	0.00	0.00	0.00
diencephalon, neonate N30.CNhs11201.1388-42B2	0.97	0.16	0.16	0.00
medulla oblongata, adult.CNhs10477.17-12C2	0.96	0.00	0.00	0.00
spinal cord, adult.CNhs10505.24-13C9	0.93	0.00	0.00	0.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D7	0.92	0.00	0.00	0.00
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A8	0.91	0.00	0.00	0.00
corpora quadrigemina, adult.CNhs10501.16-22A4	0.90	0.00	0.00	0.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F1	0.86	0.29	0.00	0.00
cerebellum, neonate N30.CNhs11135.1395-42I2	0.84	0.00	0.00	0.00
Mouse Microglia, donor2.CNhs12634.11736-123E8	0.77	0.00	0.00	0.00
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A5	0.76	0.00	0.00	0.00
cortex, adult.CNhs10473.12-14D5	0.70	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H2	0.68	0.00	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I7	0.68	0.00	0.00	0.00
olfactory brain, adult.CNhs10489.18-22I9	0.64	0.32	0.00	0.00
diencephalon, adult.CNhs10482.20-12F2	0.62	0.00	0.00	0.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A1	0.56	0.00	0.00	0.00
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D8	0.52	0.00	0.00	0.00
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A2	0.46	0.00	0.00	0.00
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A7	0.45	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G8	0.42	0.00	0.00	0.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I8	0.35	0.00	0.00	0.00
pituitary gland, adult.CNhs10493.21-1G8	0.34	0.34	0.34	0.00
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D7	0.34	0.00	0.00	0.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E4	0.28	0.00	0.00	0.00
Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G7	0.00	0.00	0.00	0.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G9	0.00	0.00	0.00	0.00
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H1	0.00	0.00	0.00	0.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I8	0.00	0.00	0.00	0.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B6	0.00	0.00	0.00	0.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A1	0.00	0.00	0.00	0.00
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A3	0.00	0.00	0.00	0.00
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A9	0.00	0.00	0.00	0.00

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p1@Shmt1
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• Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data

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No analysis results for this cluster

Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse

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GeneID:	20425
LocusTag:	RP23-278I21.7
chromosome:	11
map location:	11 B2, 11, 11 B2;;11
type of gene:	protein-coding
Symbol from nomenclature authority:	Shmt1
Full name from nomenclature authority:	serine hydroxymethyltransferase 1 (soluble)
Nomenclature status:	O
Other designations:	glycine hydroxymethyltransferase, serine hydroxymethyltransferase, cytosolic, serine methylase, glycine hydroxymethyltransferase;;serine hydroxymethyltransferase, cytosolic;;serine methylase
Modification date:	24.12.2011