FFCP PHASE1:Hg19::chr15:67418119..67418162,+
From FANTOM5_SSTAR
Jump to: navigation, search
| Short description: | p5@SMAD3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_SMAD3_5end |
| Coexpression cluster: | C2343_squamous_malignant_meningioma_embryonic_mesothelioma_bile_papillotubular |
| Association with transcript: | 65bp_to_ENST00000540846, NM_001145102, uc010ujr.1_5end |
| EntrezGene: | SMAD3 |
| HGNC: | 6769 |
| UniProt: | B7Z9Q2P84022 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@SMAD3 |
|---|
0
10
20
30
40
50
60
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 7.31e-23 | 253 |
| vascular associated smooth muscle cell | 3.20e-14 | 32 |
| smooth muscle cell | 4.95e-12 | 43 |
| smooth muscle myoblast | 4.95e-12 | 43 |
| embryonic cell | 2.09e-11 | 250 |
| mesodermal cell | 2.27e-11 | 121 |
| mesothelial cell | 9.94e-11 | 19 |
| muscle cell | 7.97e-09 | 55 |
| muscle precursor cell | 1.74e-08 | 58 |
| myoblast | 1.74e-08 | 58 |
Showing 1 to 10 of 15 entries
| Ontology term | p-value | n |
|---|---|---|
| epithelial tube | 2.21e-14 | 117 |
| endoderm-derived structure | 8.25e-14 | 160 |
| endoderm | 8.25e-14 | 160 |
| presumptive endoderm | 8.25e-14 | 160 |
| artery | 2.24e-13 | 42 |
| arterial blood vessel | 2.24e-13 | 42 |
| arterial system | 2.24e-13 | 42 |
| primordium | 6.50e-13 | 160 |
| endo-epithelium | 1.82e-12 | 82 |
| digestive system | 5.19e-12 | 145 |
Showing 1 to 10 of 54 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 1.98e-16 | 106 |
| cell type cancer | 2.20e-12 | 143 |
| squamous cell carcinoma | 1.55e-08 | 14 |
| cancer | 1.51e-07 | 235 |
| disease of cellular proliferation | 5.72e-07 | 239 |
Showing 1 to 5 of 5 entries
