MCL coexpression mm9:1832
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr6:72548588..72548603,+ | p1@Retsat |
| Mm9::chr7:105499448..105499454,- | p@chr7:105499448..105499454 - |
| Mm9::chr7:105508945..105508980,- | p5@Tsku |
| Mm9::chr7:105509758..105509765,- | p4@Tsku |
| Mm9::chr7:105509785..105509805,- | p1@Tsku |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0051786 | all-trans-retinol 13,14-reductase activity | 0.00383467085990169 |
| GO:0042572 | retinol metabolic process | 0.00383467085990169 |
| GO:0016117 | carotenoid biosynthetic process | 0.00383467085990169 |
| GO:0016114 | terpenoid biosynthetic process | 0.00383467085990169 |
| GO:0005640 | nuclear outer membrane | 0.00383467085990169 |
| GO:0016109 | tetraterpenoid biosynthetic process | 0.00383467085990169 |
| GO:0016116 | carotenoid metabolic process | 0.00383467085990169 |
| GO:0016108 | tetraterpenoid metabolic process | 0.00383467085990169 |
| GO:0001523 | retinoid metabolic process | 0.00920119297709492 |
| GO:0016101 | diterpenoid metabolic process | 0.00920119297709492 |
| GO:0006721 | terpenoid metabolic process | 0.00975830620272628 |
| GO:0006776 | vitamin A metabolic process | 0.0100255672477407 |
| GO:0008299 | isoprenoid biosynthetic process | 0.0100255672477407 |
| GO:0031968 | organelle outer membrane | 0.0112428208673715 |
| GO:0006775 | fat-soluble vitamin metabolic process | 0.0112428208673715 |
| GO:0046148 | pigment biosynthetic process | 0.0124551687479699 |
| GO:0006720 | isoprenoid metabolic process | 0.0130740339887141 |
| GO:0042440 | pigment metabolic process | 0.0131985404761078 |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | 0.0164714667062015 |
| GO:0019748 | secondary metabolic process | 0.0164714667062015 |
| GO:0019867 | outer membrane | 0.0167801800199425 |
| GO:0050660 | FAD binding | 0.0192955015041163 |
| GO:0044453 | nuclear membrane part | 0.0192955015041163 |
| GO:0006766 | vitamin metabolic process | 0.0192955015041163 |
| GO:0031965 | nuclear membrane | 0.0192955015041163 |
| GO:0005789 | endoplasmic reticulum membrane | 0.0206108922087199 |
| GO:0042175 | nuclear envelope-endoplasmic reticulum network | 0.0206964298290346 |
| GO:0044432 | endoplasmic reticulum part | 0.0213760759761628 |
| GO:0042445 | hormone metabolic process | 0.0213760759761628 |
| GO:0005635 | nuclear envelope | 0.0275309638111959 |
| GO:0050662 | coenzyme binding | 0.0286101241571493 |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.0298590547782988 |
| GO:0048037 | cofactor binding | 0.0388684960662591 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| trunk mesenchyme | 3.31e-07 | 45 |
| mesenchyme | 4.07e-07 | 61 |
| entire embryonic mesenchyme | 4.07e-07 | 61 |
| digestive tract diverticulum | 8.09e-07 | 23 |
| sac | 8.09e-07 | 23 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 1.36559 |
| MA0004.1 | 0.603793 |
| MA0006.1 | 0.419915 |
| MA0007.1 | 1.43525 |
| MA0009.1 | 1.06266 |
| MA0014.1 | 1.13011 |
| MA0017.1 | 1.14026 |
| MA0019.1 | 0.874061 |
| MA0024.1 | 1.01759 |
| MA0025.1 | 1.30092 |
| MA0027.1 | 2.72141 |
| MA0028.1 | 0.43138 |
| MA0029.1 | 0.995171 |
| MA0030.1 | 1.00195 |
| MA0031.1 | 0.965177 |
| MA0038.1 | 0.757669 |
| MA0040.1 | 1.07552 |
| MA0041.1 | 0.522007 |
| MA0042.1 | 0.507715 |
| MA0043.1 | 1.1618 |
| MA0046.1 | 1.09955 |
| MA0048.1 | 0.205696 |
| MA0050.1 | 0.645342 |
| MA0051.1 | 0.767098 |
| MA0052.1 | 1.08379 |
| MA0055.1 | 1.50466 |
| MA0056.1 | 0 |
| MA0057.1 | 1.06992 |
| MA0058.1 | 0.50032 |
| MA0059.1 | 0.513699 |
| MA0060.1 | 0.330907 |
| MA0061.1 | 0.364227 |
| MA0063.1 | 0 |
| MA0066.1 | 0.746072 |
| MA0067.1 | 1.41352 |
| MA0068.1 | 0.197245 |
| MA0069.1 | 1.08414 |
| MA0070.1 | 1.07418 |
| MA0071.1 | 0.644448 |
| MA0072.1 | 1.06547 |
| MA0073.1 | 0.103695 |
| MA0074.1 | 0.708108 |
| MA0076.1 | 0.470037 |
| MA0077.1 | 1.04318 |
| MA0078.1 | 0.801834 |
| MA0081.1 | 0.53877 |
| MA0083.1 | 1.16099 |
| MA0084.1 | 1.74401 |
| MA0087.1 | 1.11687 |
| MA0088.1 | 1.42769 |
| MA0089.1 | 0 |
| MA0090.1 | 0.566938 |
| MA0091.1 | 0.617887 |
| MA0092.1 | 0.567278 |
| MA0093.1 | 0.440484 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.695835 |
| MA0101.1 | 0.523409 |
| MA0103.1 | 0.460936 |
| MA0105.1 | 1.28296 |
| MA0106.1 | 0.809991 |
| MA0107.1 | 0.454197 |
| MA0108.2 | 0.897859 |
| MA0109.1 | 0 |
| MA0111.1 | 0.582193 |
| MA0113.1 | 0.780358 |
| MA0114.1 | 0.949408 |
| MA0115.1 | 1.16466 |
| MA0116.1 | 1.07655 |
| MA0117.1 | 1.13165 |
| MA0119.1 | 1.30068 |
| MA0122.1 | 1.15196 |
| MA0124.1 | 1.35963 |
| MA0125.1 | 1.28445 |
| MA0130.1 | 0 |
| MA0131.1 | 0.869325 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.19898 |
| MA0136.1 | 0.729175 |
| MA0139.1 | 0.295945 |
| MA0140.1 | 0.695713 |
| MA0141.1 | 0.482463 |
| MA0142.1 | 0.950155 |
| MA0143.1 | 0.797553 |
| MA0144.1 | 0.956957 |
| MA0145.1 | 0.927481 |
| MA0146.1 | 0.475727 |
| MA0147.1 | 0.378658 |
| MA0148.1 | 0.621195 |
| MA0149.1 | 0.529387 |
| MA0062.2 | 0.254018 |
| MA0035.2 | 0.700704 |
| MA0039.2 | 0.489701 |
| MA0138.2 | 0.861035 |
| MA0002.2 | 0.299191 |
| MA0137.2 | 0.479301 |
| MA0104.2 | 0.315156 |
| MA0047.2 | 0.75686 |
| MA0112.2 | 0.157681 |
| MA0065.2 | 0.158101 |
| MA0150.1 | 0.587557 |
| MA0151.1 | 0 |
| MA0152.1 | 0.756973 |
| MA0153.1 | 1.21594 |
| MA0154.1 | 2.46536 |
| MA0155.1 | 0.515751 |
| MA0156.1 | 0.469089 |
| MA0157.1 | 0.91689 |
| MA0158.1 | 0 |
| MA0159.1 | 0.389847 |
| MA0160.1 | 0.624415 |
| MA0161.1 | 0 |
| MA0162.1 | 0.0699535 |
| MA0163.1 | 0.230013 |
| MA0164.1 | 0.729558 |
| MA0080.2 | 0.455167 |
| MA0018.2 | 0.739807 |
| MA0099.2 | 0.854449 |
| MA0079.2 | 0.435944 |
| MA0102.2 | 1.79669 |
| MA0258.1 | 0.346619 |
| MA0259.1 | 0.960816 |
| MA0442.1 | 0 |
