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MCL coexpression mm9:352

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:110829330..110829356,+p1@Kcnj16
Mm9::chr11:110887986..110887996,+p@chr11:110887986..110887996
+
Mm9::chr11:110888086..110888097,+p@chr11:110888086..110888097
+
Mm9::chr11:110888191..110888202,+p@chr11:110888191..110888202
+
Mm9::chr11:110888212..110888223,+p@chr11:110888212..110888223
+
Mm9::chr11:110888243..110888264,+p@chr11:110888243..110888264
+
Mm9::chr11:110888334..110888345,+p@chr11:110888334..110888345
+
Mm9::chr11:110888559..110888570,+p@chr11:110888559..110888570
+
Mm9::chr16:95479224..95479251,+p4@Kcnj15
Mm9::chr16:95479762..95479812,+p2@Kcnj15
Mm9::chr16:95500135..95500148,+p@chr16:95500135..95500148
+
Mm9::chr16:95518529..95518548,+p@chr16:95518529..95518548
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Mm9::chr16:95519497..95519507,+p@chr16:95519497..95519507
+
Mm9::chr16:95519570..95519592,+p@chr16:95519570..95519592
+
Mm9::chr16:95520301..95520322,+p@chr16:95520301..95520322
+
Mm9::chr16:95520404..95520427,+p@chr16:95520404..95520427
+
Mm9::chr17:53985259..53985325,-p2@Sult1c2
Mm9::chr19:47490807..47490818,-p@chr19:47490807..47490818
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Mm9::chr2:150445083..150445108,-p@chr2:150445083..150445108
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Mm9::chr2:60437965..60437970,-p@chr2:60437965..60437970
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Mm9::chr7:47790409..47790412,-p@chr7:47790409..47790412
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Mm9::chr7:52814581..52814608,+p2@Hsd17b14


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005242inward rectifier potassium channel activity0.000447372529800722
GO:0005249voltage-gated potassium channel activity0.00717172697264855
GO:0030955potassium ion binding0.00717172697264855
GO:0022843voltage-gated cation channel activity0.00717172697264855
GO:0005267potassium channel activity0.00717172697264855
GO:0003987acetate-CoA ligase activity0.00744527133803683
GO:0006813potassium ion transport0.00744527133803683
GO:0022832voltage-gated channel activity0.00744527133803683
GO:0005244voltage-gated ion channel activity0.00744527133803683
GO:0031420alkali metal ion binding0.00752153119655392
GO:0006085acetyl-CoA biosynthetic process0.0114205222894252
GO:0005261cation channel activity0.0114205222894252
GO:0016405CoA-ligase activity0.0114205222894252
GO:0022836gated channel activity0.0114205222894252
GO:0046873metal ion transmembrane transporter activity0.0121532063962398
GO:0015672monovalent inorganic cation transport0.0121532063962398
GO:0005216ion channel activity0.0152915638660538
GO:0016878acid-thiol ligase activity0.0152915638660538
GO:0022838substrate specific channel activity0.0152915638660538
GO:0022803passive transmembrane transporter activity0.0152915638660538
GO:0015267channel activity0.0152915638660538
GO:0016208AMP binding0.0152915638660538
GO:0030001metal ion transport0.0154776894817964
GO:0008324cation transmembrane transporter activity0.0196797953300529
GO:0006812cation transport0.0196797953300529
GO:0016877ligase activity, forming carbon-sulfur bonds0.0198224386536927
GO:0006084acetyl-CoA metabolic process0.0281834557475736
GO:0015075ion transmembrane transporter activity0.0315087188656955
GO:0008146sulfotransferase activity0.0339201572775825
GO:0006811ion transport0.0348154338118834
GO:0016782transferase activity, transferring sulfur-containing groups0.0348154338118834
GO:0022891substrate-specific transmembrane transporter activity0.0348154338118834
GO:0031980mitochondrial lumen0.0348154338118834
GO:0005759mitochondrial matrix0.0348154338118834
GO:0022857transmembrane transporter activity0.0438405471363389



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney7.32e-1714
kidney mesenchyme7.32e-1714
upper urinary tract7.32e-1714
kidney rudiment7.32e-1714
kidney field7.32e-1714
urinary system structure3.24e-1518
renal system2.75e-1419
cavitated compound organ1.56e-1021
stomach5.88e-0716
food storage organ5.88e-0716


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.57945e-06
MA0004.10.144883
MA0006.10.0564154
MA0007.10.421767
MA0009.10.483331
MA0014.10.000273396
MA0017.10.239891
MA0019.10.329708
MA0024.10.445298
MA0025.10.694475
MA0027.12.07936
MA0028.10.0607913
MA0029.10.426655
MA0030.10.43227
MA0031.10.402033
MA0038.10.243815
MA0040.10.494317
MA0041.11.12403
MA0042.10.645474
MA0043.10.569356
MA0046.10.514989
MA0048.10.096215
MA0050.11.55402
MA0051.10.698522
MA0052.10.501416
MA0055.10.197552
MA0056.10
MA0057.10.327386
MA0058.10.0904678
MA0059.10.0968666
MA0060.10.0282014
MA0061.10.148219
MA0063.10
MA0066.10.664275
MA0067.10.798606
MA0068.10.00518327
MA0069.10.501715
MA0070.10.493176
MA0071.10.169125
MA0072.10.485733
MA0073.10.695331
MA0074.10.209912
MA0076.10.0767377
MA0077.10.466808
MA0078.10.275441
MA0081.12.34812
MA0083.12.38612
MA0084.11.11388
MA0087.10.530004
MA0088.10.00185786
MA0089.10
MA0090.10.392445
MA0091.10.153118
MA0092.10.124428
MA0093.10.0643828
MA0095.10
MA0098.10
MA0100.10.201797
MA0101.10.101635
MA0103.10.253989
MA0105.10.0113155
MA0106.10.281418
MA0107.10.0699845
MA0108.20.348212
MA0109.10
MA0111.10.413949
MA0113.10.720329
MA0114.10.145706
MA0115.10.571881
MA0116.10.0563303
MA0117.10.542889
MA0119.11.13093
MA0122.10.560692
MA0124.10.748494
MA0125.11.62725
MA0130.10
MA0131.10.326061
MA0132.10
MA0133.10
MA0135.10.602346
MA0136.10.637057
MA0139.10.0199785
MA0140.10.201717
MA0141.10.588454
MA0142.11.01146
MA0143.10.748833
MA0144.10.0377982
MA0145.10.0147023
MA0146.10.000545954
MA0147.10.0420513
MA0148.10.155077
MA0149.10.104621
MA0062.20.012228
MA0035.20.591852
MA0039.20.000115509
MA0138.20.319705
MA0002.20.434007
MA0137.20.080825
MA0104.20.0242964
MA0047.20.243248
MA0112.20.22235
MA0065.20.566931
MA0150.10.421594
MA0151.10
MA0152.10.243327
MA0153.10.617506
MA0154.10.360977
MA0155.10.0197121
MA0156.10.263883
MA0157.10.363212
MA0158.10
MA0159.10.174007
MA0160.10.924598
MA0161.10
MA0162.19.92913e-05
MA0163.10.0624976
MA0164.11.85886
MA0080.20.528447
MA0018.20.231394
MA0099.20.314682
MA0079.20.000394645
MA0102.21.16504
MA0258.10.310208
MA0259.10.0383313
MA0442.10
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