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MCL coexpression mm9:990

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Phase1 CAGE Peaks

 Short description
Mm9::chr2:25089697..25089712,-p3@Slc34a3
Mm9::chr2:25089723..25089743,-p1@Slc34a3
Mm9::chr2:25089747..25089771,-p2@Slc34a3
Mm9::chr4:133074652..133074665,+p7@1810019J16Rik
Mm9::chr4:49486777..49486790,-p1@Acnat1
Mm9::chr5:114453822..114453840,+p2@Dao
Mm9::chr5:64646376..64646396,-p@chr5:64646376..64646396
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Mm9::chr7:135070423..135070434,-p@chr7:135070423..135070434
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006551leucine metabolic process0.00690259664969827
GO:0003884D-amino-acid oxidase activity0.00690259664969827
GO:0015321sodium-dependent phosphate transmembrane transporter activity0.00690259664969827
GO:0009081branched chain family amino acid metabolic process0.0110426418245154
GO:0015114phosphate transmembrane transporter activity0.0110426418245154
GO:0016641oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor0.0181103811418533
GO:0016638oxidoreductase activity, acting on the CH-NH2 group of donors0.0181103811418533
GO:0005903brush border0.0181103811418533
GO:0015103inorganic anion transmembrane transporter activity0.0214600372087656
GO:0016324apical plasma membrane0.0337801000208444
GO:0006817phosphate transport0.0404009348764478
GO:0045177apical part of cell0.0404009348764478
GO:0031402sodium ion binding0.0404009348764478
GO:0042579microbody0.0404009348764478
GO:0005777peroxisome0.0404009348764478
GO:0008509anion transmembrane transporter activity0.0453401334749049
GO:0006814sodium ion transport0.0453401334749049



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine1.31e-1531
gastrointestinal system5.38e-1247


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.127295
MA0004.10.434673
MA0006.10.271714
MA0007.11.07722
MA0009.10.870101
MA0014.10.0611475
MA0017.10.804572
MA0019.10.688051
MA0024.10.826339
MA0025.11.10341
MA0027.12.51754
MA0028.10.281528
MA0029.10.804619
MA0030.11.89978
MA0031.11.82653
MA0038.10.577528
MA0040.10.882616
MA0041.11.68941
MA0042.10.919611
MA0043.10.966833
MA0046.10.906029
MA0048.10.102483
MA0050.10.472794
MA0051.10.586414
MA0052.10.890676
MA0055.14.48456
MA0056.10
MA0057.10.0935008
MA0058.10.341628
MA0059.10.353484
MA0060.10.197678
MA0061.10.224905
MA0063.10
MA0066.10.566617
MA0067.11.21448
MA0068.10.0965831
MA0069.10.891016
MA0070.10.881319
MA0071.10.471969
MA0072.10.872842
MA0073.10.214367
MA0074.12.26329
MA0076.10.315013
MA0077.10.851175
MA0078.10.61926
MA0081.10.375851
MA0083.10.96604
MA0084.11.54225
MA0087.10.922929
MA0088.10.49616
MA0089.10
MA0090.10.401197
MA0091.10.447561
MA0092.10.401504
MA0093.10.289361
MA0095.10
MA0098.10
MA0100.10.519598
MA0101.10.362124
MA0103.10.307078
MA0105.10.133231
MA0106.10.626997
MA0107.10.301222
MA0108.20.710846
MA0109.10
MA0111.10.415012
MA0113.10.598933
MA0114.11.85023
MA0115.10.969632
MA0116.12.93249
MA0117.10.937363
MA0119.10.362692
MA0122.10.957212
MA0124.11.16127
MA0125.11.0872
MA0130.10
MA0131.10.683521
MA0132.10
MA0133.10
MA0135.11.00325
MA0136.10.550755
MA0139.10.506952
MA0140.10.519484
MA0141.12.37778
MA0142.10.761136
MA0143.11.49307
MA0144.10.225588
MA0145.10.246409
MA0146.10.198184
MA0147.10.236889
MA0148.12.96729
MA0149.10.367458
MA0062.20.137653
MA0035.20.524137
MA0039.20.00752803
MA0138.20.675599
MA0002.20.172399
MA0137.20.32312
MA0104.20.18504
MA0047.23.53312
MA0112.20.527225
MA0065.21.35639
MA0150.10.419883
MA0151.10
MA0152.10.576873
MA0153.12.3265
MA0154.12.25112
MA0155.12.62015
MA0156.10.314185
MA0157.11.73039
MA0158.10
MA0159.10.688775
MA0160.11.14982
MA0161.10
MA0162.10.0211019
MA0163.11.36861
MA0164.10.551114
MA0080.20.302064
MA0018.20.560731
MA0099.20.669311
MA0079.20.000285071
MA0102.21.59466
MA0258.10.210437
MA0259.10.227035
MA0442.10
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